compare.centrality: Compare gene centralities

In zhongmicai/bigSCale2_singleCell: A framework for the analysis of single cell data (RNA-seq and ATAC-seq) including clustering,phenotyping,pseudotime and inferring gene regulatory networks.

Description

Works with any given number of networks (N). The centralities previously calculated with compute.network() for N networks are given as input. The script sorts the genes accoring to their change in centrality between the first network (first element of the input list) and the other N-1 networks (the rest of the list)

Usage

compare.centrality(centralities, names.conditions)

Arguments

centralities	List of at least two elements. Each element must be the (data.frames) of the centralities previously calculated by compute.network().
names.conditions	character of the names of the input networks, same length of the compute.network()

Value

A list with a (data.frame) for each centrality. In each (data.frame) the genes are ranked for thier change in centrality.

Examples

check the online tutorial at Github

zhongmicai/bigSCale2_singleCell documentation built on Nov. 5, 2019, 1:26 p.m.