setDistances: setDistances

Description Usage Arguments Value Examples

Description

Computes cell to cell distances using the highly variable genes.

Usage

1
setDistances(object, modality = "bigscale")

Arguments

modality

If classic uses the default bigSCale algorythm. If alternative, uses an alternative approach which gives a different clustering/TNSE in case you are not satisfied with the default one.

sce

object of the SingleCellExperiment class.

Value

object of the SingleCellExperiment class, with cell to cell distances stored inside (in the virtual memory)

Examples

1
sce=setDistances(sce)

zhongmicai/bigSCale2_singleCell documentation built on Nov. 5, 2019, 1:26 p.m.