viewSignatures: atures
In zhongmicai/bigSCale2_singleCell: A framework for the analysis of single cell data (RNA-seq and ATAC-seq) including clustering,phenotyping,pseudotime and inferring gene regulatory networks.
Description
Usage
Arguments
Examples
Description
Plots and heatmap with dendrogram, clusters, pseudotime, transcriptome complexity, custom user colData and expression values for markers and signtures.
Usage
1
viewSignatures(object, selected.cluster)
Arguments
sce
object of the SingleCellExperiment class.
Examples
1
2
viewSignatures(sce) # plots all the signatures of correlated markers
viewSignatures(sce,selected.cluster=1) # plots the markers (of all specificity levels) of cluster 1
zhongmicai/bigSCale2_singleCell documentation built on Nov. 5, 2019, 1:26 p.m.
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Description Usage Arguments Examples
Description
Plots and heatmap with dendrogram, clusters, pseudotime, transcriptome complexity, custom user colData and expression values for markers and signtures.
Usage
1 | viewSignatures(object, selected.cluster)
|
Arguments
sce |
object of the SingleCellExperiment class. |
Examples
1 2 | viewSignatures(sce) # plots all the signatures of correlated markers
viewSignatures(sce,selected.cluster=1) # plots the markers (of all specificity levels) of cluster 1
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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