storeNormalized: storeNormalized

In zhongmicai/bigSCale2_singleCell: A framework for the analysis of single cell data (RNA-seq and ATAC-seq) including clustering,phenotyping,pseudotime and inferring gene regulatory networks.

Description

Calculates and stores the normalized counts

Usage

storeNormalized(object, memory.save = TRUE)

Arguments

memory.save	enables a series of tricks to reduce RAM memory usage. Aware of one case (in linux) in which this option causes irreversible error.
sce	object of the SingleCellExperiment class.

Value

object of the SingleCellExperiment class with normalized counts saved inside (in the virtual memory)

Examples

sce=storeNormalized(sce)

zhongmicai/bigSCale2_singleCell documentation built on Nov. 5, 2019, 1:26 p.m.