Files in zhongmicai/complexHeatmap
Make Complex Heatmaps
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
NEWS
R/00_S4_generic_methods.R
R/00_size.R
R/AdditiveUnit-class.R
R/AnnotationFunction-class.R
R/AnnotationFunction-function.R
R/ColorMapping-class.R
R/Heatmap-class.R
R/Heatmap-draw_component.R
R/Heatmap-layout.R
R/Heatmap-utils.R
R/HeatmapAnnotation-class.R
R/HeatmapList-class.R
R/HeatmapList-draw_component.R
R/HeatmapList-get_order.R
R/HeatmapList-layout.R
R/HeatmapList-legends.R
R/SingleAnnotation-class.R
R/Upset.R
R/annotation_axis.R
R/decorate.R
R/densityHeatmap.R
R/global.R
R/grid.Legend.R
R/grid.dendrogram.R
R/is_abs_unit.R
R/oncoPrint.R
R/overview.R
R/stacked_plot.R
R/utils.R
R/zzz.R
README.md
inst/CITATION
inst/extdata/dmr_summary.rds
inst/extdata/gene_expression.rds
inst/extdata/generate_random_dataset.R
inst/extdata/gr.rds
inst/extdata/measles.rds
inst/extdata/meth.rds
inst/extdata/random_meth_expr_data.RData
inst/extdata/sample_order.txt
inst/extdata/tcga_lung_adenocarcinoma_provisional_ras_raf_mek_jnk_signalling.rds
inst/extdata/tcga_lung_adenocarcinoma_provisional_ras_raf_mek_jnk_signalling.txt
man/AdditiveUnit-class.rd
man/AdditiveUnit.rd
man/AnnotationFunction-class.rd
man/AnnotationFunction.rd
man/ColorMapping-class.rd
man/ColorMapping.rd
man/ComplexHeatmap-package.rd
man/Extract.AnnotationFunction.rd
man/Extract.Heatmap.rd
man/Extract.HeatmapAnnotation.rd
man/Extract.HeatmapList.rd
man/Extract.SingleAnnotation.rd
man/Extract.comb_mat.rd
man/Heatmap-class.rd
man/Heatmap.rd
man/HeatmapAnnotation-class.rd
man/HeatmapAnnotation.rd
man/HeatmapList-class.rd
man/HeatmapList.rd
man/Legend.rd
man/Legends-class.rd
man/Legends.rd
man/SingleAnnotation-class.rd
man/SingleAnnotation.rd
man/UpSet.rd
man/add.AdditiveUnit.rd
man/add_heatmap-Heatmap-method.rd
man/add_heatmap-HeatmapAnnotation-method.rd
man/add_heatmap-HeatmapList-method.rd
man/add_heatmap-dispatch.rd
man/adjust_dend_by_x.rd
man/adjust_heatmap_list-HeatmapList-method.rd
man/anno_barplot.rd
man/anno_block.rd
man/anno_boxplot.rd
man/anno_density.rd
man/anno_empty.rd
man/anno_histogram.rd
man/anno_horizon.rd
man/anno_image.rd
man/anno_joyplot.rd
man/anno_lines.rd
man/anno_link.rd
man/anno_mark.rd
man/anno_oncoprint_barplot.rd
man/anno_points.rd
man/anno_simple.rd
man/anno_summary.rd
man/anno_text.rd
man/anno_zoom.rd
man/annotation_axis_grob.rd
man/annotation_legend_size-HeatmapList-method.rd
man/c.HeatmapAnnotation.rd
man/cluster_within_group.rd
man/color_mapping_legend-ColorMapping-method.rd
man/columnAnnotation.rd
man/column_dend-Heatmap-method.rd
man/column_dend-HeatmapList-method.rd
man/column_dend-dispatch.rd
man/column_order-Heatmap-method.rd
man/column_order-HeatmapList-method.rd
man/column_order-dispatch.rd
man/comb_degree.rd
man/comb_name.rd
man/comb_size.rd
man/component_height-Heatmap-method.rd
man/component_height-HeatmapList-method.rd
man/component_height-dispatch.rd
man/component_width-Heatmap-method.rd
man/component_width-HeatmapList-method.rd
man/component_width-dispatch.rd
man/copy_all-AnnotationFunction-method.rd
man/copy_all-SingleAnnotation-method.rd
man/copy_all-dispatch.rd
man/decorate_annotation.rd
man/decorate_column_dend.rd
man/decorate_column_names.rd
man/decorate_column_title.rd
man/decorate_dend.rd
man/decorate_dimnames.rd
man/decorate_heatmap_body.rd
man/decorate_row_dend.rd
man/decorate_row_names.rd
man/decorate_row_title.rd
man/decorate_title.rd
man/default_axis_param.rd
man/default_get_type.rd
man/dend_heights.rd
man/dend_xy.rd
man/dendrogramGrob.rd
man/densityHeatmap.rd
man/dim.Heatmap.rd
man/dist2.rd
man/draw-AnnotationFunction-method.rd
man/draw-Heatmap-method.rd
man/draw-HeatmapAnnotation-method.rd
man/draw-HeatmapList-method.rd
man/draw-Legends-method.rd
man/draw-SingleAnnotation-method.rd
man/draw-dispatch.rd
man/draw_annotation-Heatmap-method.rd
man/draw_annotation_legend-HeatmapList-method.rd
man/draw_dend-Heatmap-method.rd
man/draw_dimnames-Heatmap-method.rd
man/draw_heatmap_body-Heatmap-method.rd
man/draw_heatmap_legend-HeatmapList-method.rd
man/draw_heatmap_list-HeatmapList-method.rd
man/draw_title-Heatmap-method.rd
man/draw_title-HeatmapList-method.rd
man/draw_title-dispatch.rd
man/extract_comb.rd
man/getXY_in_parent_vp.rd
man/get_color_mapping_list-HeatmapAnnotation-method.rd
man/get_legend_param_list-HeatmapAnnotation-method.rd
man/grid.annotation_axis.rd
man/grid.boxplot.rd
man/grid.dendrogram.rd
man/grid.draw.Legends.rd
man/heatmap_legend_size-HeatmapList-method.rd
man/height.AnnotationFunction.rd
man/height.Heatmap.rd
man/height.HeatmapAnnotation.rd
man/height.HeatmapList.rd
man/height.Legends.rd
man/height.SingleAnnotation.rd
man/heightAssign.AnnotationFunction.rd
man/heightAssign.HeatmapAnnotation.rd
man/heightAssign.SingleAnnotation.rd
man/heightDetails.annotation_axis.rd
man/heightDetails.legend.rd
man/heightDetails.legend_body.rd
man/heightDetails.packed_legends.rd
man/ht_global_opt.rd
man/ht_opt.rd
man/is_abs_unit.rd
man/length.HeatmapAnnotation.rd
man/length.HeatmapList.rd
man/list_components.rd
man/list_to_matrix.rd
man/make_column_cluster-Heatmap-method.rd
man/make_comb_mat.rd
man/make_layout-Heatmap-method.rd
man/make_layout-HeatmapList-method.rd
man/make_layout-dispatch.rd
man/make_row_cluster-Heatmap-method.rd
man/map_to_colors-ColorMapping-method.rd
man/max_text_height.rd
man/max_text_width.rd
man/merge_dendrogram.rd
man/names.HeatmapAnnotation.rd
man/names.HeatmapList.rd
man/namesAssign.HeatmapAnnotation.rd
man/ncol.Heatmap.rd
man/nobs.AnnotationFunction.rd
man/nobs.HeatmapAnnotation.rd
man/nobs.SingleAnnotation.rd
man/normalize_comb_mat.rd
man/nrow.Heatmap.rd
man/oncoPrint.rd
man/order.comb_mat.rd
man/packLegend.rd
man/pct_v_pct.rd
man/pindex.rd
man/prepare-Heatmap-method.rd
man/print.comb_mat.rd
man/re_size-HeatmapAnnotation-method.rd
man/restore_matrix.rd
man/rowAnnotation.rd
man/row_anno_barplot.rd
man/row_anno_boxplot.rd
man/row_anno_density.rd
man/row_anno_histogram.rd
man/row_anno_link.rd
man/row_anno_points.rd
man/row_anno_text.rd
man/row_dend-Heatmap-method.rd
man/row_dend-HeatmapList-method.rd
man/row_dend-dispatch.rd
man/row_order-Heatmap-method.rd
man/row_order-HeatmapList-method.rd
man/row_order-dispatch.rd
man/set_component_height-Heatmap-method.rd
man/set_component_width-Heatmap-method.rd
man/set_name.rd
man/set_size.rd
man/show-AnnotationFunction-method.rd
man/show-ColorMapping-method.rd
man/show-Heatmap-method.rd
man/show-HeatmapAnnotation-method.rd
man/show-HeatmapList-method.rd
man/show-SingleAnnotation-method.rd
man/show-dispatch.rd
man/size.AnnotationFunction.rd
man/size.HeatmapAnnotation.rd
man/size.SingleAnnotation.rd
man/sizeAssign.AnnotationFunction.rd
man/sizeAssign.HeatmapAnnotation.rd
man/sizeAssign.SingleAnnotation.rd
man/smartAlign2.rd
man/str.comb_mat.rd
man/subset_gp.rd
man/subset_matrix_by_row.rd
man/subset_vector.rd
man/summary.Heatmap.rd
man/summary.HeatmapList.rd
man/t.comb_mat.rd
man/test_alter_fun.rd
man/unify_mat_list.rd
man/upset_right_annotation.rd
man/upset_top_annotation.rd
man/width.AnnotationFunction.rd
man/width.Heatmap.rd
man/width.HeatmapAnnotation.rd
man/width.HeatmapList.rd
man/width.Legends.rd
man/width.SingleAnnotation.rd
man/widthAssign.AnnotationFunction.rd
man/widthAssign.HeatmapAnnotation.rd
man/widthAssign.SingleAnnotation.rd
man/widthDetails.annotation_axis.rd
man/widthDetails.legend.rd
man/widthDetails.legend_body.rd
man/widthDetails.packed_legends.rd
tests/test-all.R
tests/testthat/test-HeatmapAnnotation-size.R
tests/testthat/test-UpSet.R
tests/testthat/test-utiles.R
tests_not_run/test-AnnotationFunction.R
tests_not_run/test-ColorMapping-class.R
tests_not_run/test-Heatmap-class.R
tests_not_run/test-Heatmap-cluster.R
tests_not_run/test-HeatmapAnnotation.R
tests_not_run/test-HeatmapList-class.R
tests_not_run/test-Legend.R
tests_not_run/test-SingleAnnotation.R
tests_not_run/test-annotation_axis.R
tests_not_run/test-dendrogram.R
tests_not_run/test-multiple-page.R
tests_not_run/test-oncoPrint.R
tests_not_run/test-upset.R
tests_not_run/test-utils.R
vignettes/complex_heatmap.rmd
vignettes/custom.css
vignettes/most_probably_asked_questions.Rmd
