decorate_dimnames: Decorate Heatmap Dimension Names

Description Usage Arguments Details Value Author(s) Examples

Description

Decorate Heatmap Dimension Names

Usage

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decorate_dimnames(heatmap, code, slice = 1, which = c("column", "row"),
    envir = new.env(parent = parent.frame()))

Arguments

heatmap

Name of the heatmap.

code

Code that adds graphics in the selected viewport.

slice

Index of the row slice or column slice in the heatmap.

which

on rows or on columns?

envir

where to look for variables inside code.

Details

If you know the dimensions of the matrix, it is simple to calculate the position of every row name or column name in the heatmap. E.g., for the column column, the i^th name is located at:

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    # assume nc is the number of columns in the column slice
    unit((i-0.5)/nc, "npc")  

Value

The function returns no value.

Author(s)

Zuguang Gu <z.gu@dkfz.de>

Examples

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set.seed(123)
mat = matrix(rnorm(100), 10)
rownames(mat) = letters[1:10]
colnames(mat) = LETTERS[1:10]
Heatmap(mat, name = "mat", km = 2)

decorate_dimnames("mat", {
    grid.rect(gp = gpar(fill = "#FF000080"))
}, which = "row", slice = 2)

zhongmicai/complexHeatmap documentation built on May 7, 2019, 6:11 a.m.