LipidomicsExperimentData: Construction method for LipidomicsExperimentData-class

In zhuchcn/Metabase: Data container, handling, and visualization for high through-put quantitative experiment data.

Description

The construction method to build a LipidomicsExperimentData-class object.

Usage

LipidomicsExperimentData(institute = NULL, experiment_type = NULL,
  instrument = NULL, resuspension_volumn_ul = NULL,
  injection_volumn_ul = NULL, data_processing_software = NULL,
  sample_volumn_ul = NULL, internal_standards = NULL,
  conc_table_unit = NULL)

Arguments

institute	character indicates the institute where the experiment was conducted
experiment_type	character indicates what type of experiment this is, for example: lipidomics or biogenic amines.
resuspension_volumn_ul	numeric value, the volumn that samples were resuspended, in ul.
injection_volumn_ul	numeric value, the volumn injected into the instrument, in ul.
internal_standards	a data frame objec. This slot is very strict. It must have at list 4 columns: InChIKey, class, spike_amt, and spike_unit, stores the InChIKey, class of the lipid, spiked amount, and the unit, correspondingly. It also must have all the internal standards appear in the conc_table slot.
conc_table_unit	character, the conc_table value unit
instument	character indicates the instument that the samples were ran
data_precessing_software	character indicates the software the data processing was done.

Author(s)

Chenghao Zhu

zhuchcn/Metabase documentation built on July 23, 2019, 1:36 p.m.