Files in zhuchcn/Metabase
Data container, handling, and visualization for high through-put quantitative experiment data.
.Rbuildignore
.gitignore
DESCRIPTION
Metabase.Rproj
NAMESPACE
R/Class-GlycomicsSet.R
R/Class-MetabolomicsSet.R
R/Class-MicrobiomeSet.R
R/Class-ProteomicsSet.R
R/Class-mSet.R
R/Class-multiSet.R
R/Methods-LipidomicsSet.R
R/Methods-MetabolomicsSet-IO.R
R/Methods-assessor.R
R/Methods-mSet-show.R
R/Methods-mSet.R
R/Methods-plot.R
R/Methods-stats.R
R/data-lipid.R
R/test.R
README.Rmd
README.md
data-raw/302870_Zhu_CSH-QTOF_lipidomics.xlsx
data-raw/adduct.tsv
data-raw/wcmc_lipidomics_standards.csv
data/lipid.rda
data/wcmc_adduct.rda
inst/extdata/CSH-QTOF_lipidomics.xlsx
inst/extdata/lipid_conc_table.csv
inst/extdata/lipid_feature_data.csv
inst/extdata/lipid_sample_table.csv
inst/extdata/wcmc_lipidomics_standards.csv
man/ExperimentData-class.Rd
man/Extract.Rd
man/GlycomicsExperimentData-class.Rd
man/GlycomicsExperimentData.Rd
man/GlycomicsSet-class.Rd
man/GlycomicsSet.Rd
man/LipidomcisSet-class.Rd
man/LipidomicsExperimentData-class.Rd
man/LipidomicsExperimentData.Rd
man/LipidomicsSet.Rd
man/MetabolomicsExperimentData-class.Rd
man/MetabolomicsExperimentData.Rd
man/MetabolomicsSet-class.Rd
man/MetabolomicsSet.Rd
man/MicrobiomeExperimentData-class.Rd
man/MicrobiomeExperimentData.Rd
man/MicrobiomeSet-class.Rd
man/MicrobiomeSet.Rd
man/MultiExperimentData.Rd
man/MultxSet-class.Rd
man/MultxSet.Rd
man/ProteomicsExperimentData-class.Rd
man/ProteomicsExperimentData.Rd
man/ProteomicsSet-class.Rd
man/ProteomicsSet.Rd
man/as_ExpressionSet.Rd
man/as_phyloseq.Rd
man/assign_lipid_class.Rd
man/calibrate_lipidomics_wcmc.Rd
man/collapse_QC.Rd
man/conc_table-class.Rd
man/conc_table-set.Rd
man/conc_table.Rd
man/data-lipid.Rd
man/dim-mSet-method.Rd
man/experiment_data-set.Rd
man/experiment_data.Rd
man/export_excel.Rd
man/export_txt.Rd
man/featureNames-mSet-method.Rd
man/feature_data-class.Rd
man/feature_data-set.Rd
man/feature_data.Rd
man/filter_by_cv.Rd
man/hello.Rd
man/import_wcmc_excel.Rd
man/lipid_name_formater.Rd
man/mSet-class.Rd
man/mSet_deseq.Rd
man/mSet_limma.Rd
man/mz2molwt.Rd
man/nCarbons.Rd
man/nDoubleBonds.Rd
man/nFattyAcyls.Rd
man/nfeatures-mSet-method.Rd
man/nsamples-mSet-method.Rd
man/plot_boxplot.Rd
man/plot_heatmap.Rd
man/plot_hist_NA.Rd
man/plot_median_hist.Rd
man/plot_normality_boxplot.Rd
man/plot_normality_ridges.Rd
man/plot_pca.Rd
man/plot_qc.Rd
man/sampleNames-mSet-method.Rd
man/sample_table-class.Rd
man/sample_table-set.Rd
man/sample_table.Rd
man/subset_samples-mSet-method.Rd
man/summarize_ACL.Rd
man/summarize_EOD.Rd
man/summarize_features.Rd
man/summarize_lipid_ratios.Rd
man/summarize_odd_chain.Rd
man/summarize_samples.Rd
man/transform_by_feature.Rd
man/transform_by_sample.Rd
vignettes/Introduction to Metabase.Rmd
vignettes/lipidomics_wcmc.Rmd
