plot_boxplot: Make a boxplot of a feature

In zhuchcn/Metabase: Data container, handling, and visualization for high through-put quantitative experiment data.

Description

This function uses the ggplot2 package to generate a boxplot from a givin mSet-class object by specifying a feature id. The feature id must come from the feature names

Usage

plot_boxplot(object, x, feature, rows = NULL, cols = NULL,
  line = NULL, color = NULL, ...)

Arguments

object	An mSet-class object
x	A character string indicating the x variable. Must be one of the sample data variables.
feature	A character indicating the feature name to plot. Must be one of the feature names.
rows	A character string indicating the variable defines faceting groups on columns. Must be one of the sample data variables.
cols	A character string indicating the variable defines faceting groups on columns. Must be one of the sample data variables.
line	A character string indicating the variable used to draw lines between points. Must be one of the sample data variables.
color	A character string indicating the variable defines the color of lines or points. Must be one of the sample data variables.
...	Other arguments see ggboxplot

Author(s)

Chenghao Zhu

zhuchcn/Metabase documentation built on July 23, 2019, 1:36 p.m.