MicrobiomeSet: Main constructor for MicrobiomeSet class

In zhuchcn/Metabase: Data container, handling, and visualization for high through-put quantitative experiment data.

Description

This is the main construction method to create a MicrobiomeSet object.

Usage

MicrobiomeSet(conc_table = NULL, sample_table = NULL,
  feature_data = NULL, experiment_data = NULL)

Arguments

conc_table	A conc_table-class object that stores the concentration information from the experiment. The column names should be the feature IDs, and the rownames should be the row IDs. This should be a numeric matrix. This slot is equivalent to the OTU table.
sample_table	A sample_table-class object that stores the sample meta-data information. The row names should be sample IDs and should match the column names of the conc_table.
feature_data	A feature_data-class object that stores the feature infromation during the experiment. The row names should be feature IDs and should match the row names of the conc_table. The feature_data must be all character and only stores the taxonomy inforamtion (kingdom to species).
experiment_data	A list contains additional experiment information.

Author(s)

Chenghao Zhu

See Also

MicrobiomeSet-class mSet-class MetabolomicsExperimentData-class

zhuchcn/Metabase documentation built on July 23, 2019, 1:36 p.m.