plot_heatmap: Create a heatmap of an mSet object

In zhuchcn/Metabase: Data container, handling, and visualization for high through-put quantitative experiment data.

Description

Create a heatmap using an mSet object. This function requires the zheatmap package.

Usage

plot_heatmap(object, colSideBar = NULL, rowSideBar = NULL,
  scale = "sample", scale.fun = "scale", ...)

Arguments

object	an mSet object
colSideBar	string, the sample
scale	string, must be one of sample, feature, or none.
scale.fun,	string, must be one either scale or absolute_scale

See Also

zheatmap

Examples

mset = subset_features(lipid, 1:25)
plot_heatmap(lipid)
plot_heatmap(lipid, colSideBar = "Treatment")
plot_heatmap(lipid, rowsSideBar = "class")

zhuchcn/Metabase documentation built on July 23, 2019, 1:36 p.m.