Man pages for zoonproject/modules
Species Distribution Modelling Code Modules for the ZOON Package
| addInteraction | Set up interactions among covariates |
| AddRandomUniformPredictors | Process module: AddRandomUniformPredictors |
| AIC | Returns the AIC value for LogisticRegession models |
| AirNCEP | Covariate module: AirNCEP |
| AnophelesPlumbeus | Occurrence module: AnophelesPlumbeus |
| Appify | Appify |
| AUC | Plot estimated coefficients from LogisticRegression |
| Background | Process module: Background |
| BackgroundAndCrossvalid | Process module: BackgroundAndCrossvalid |
| Bioclim | Covariate module: Bioclim |
| Bioclim_future | Covariate module: Bioclim_future |
| BiomodModel | Model module: BiomodModel |
| Bootstrap | Process module: Boostrap |
| CarolinaWrenPA | Presence/absence data for the Carolina Wren in the USA |
| CarolinaWrenPO | Presence-only data for the Carolina Wren in the USA |
| CarolinaWrenRasters | Covariate rasters for the USA used in the Carolina Wren... |
| CarolinaWrenValidation | Presence/absence validation data for the Carolina Wren in the... |
| Clean | Process module: Clean |
| CoefficientPlot | Plot estimated coefficients from LogisticRegression |
| CovHistograms | Histograms of Covariate data |
| Crossvalidate | Process module: Crossvalidate |
| CWBZimbabwe | Occurrence module: coffee white stem borer surveys in... |
| DataSummary | Output module: DataSummary |
| Deviance | Returns the Deviance value for LogisticRegession models |
| Domain | Model module: Domain |
| GBM | Model module: GBM |
| GenerateCovariateReport | Generate a data profiling report |
| InteractiveCovariateMap | Output module: InteractiveCovariateMap |
| InteractiveMap | Output module: InteractiveMap |
| InteractiveOccurrenceMap | Interactive Occurrence Map |
| JitterOccurrence | Add noise to occurrence coordinates |
| LocalOccurrenceData | Occurrence module: LocalOccurrenceData |
| LocalOccurrenceDataFrame | Occurrence module: LocalOccurrenceDataFrame |
| LocalRaster | Covariate module: LocalRaster |
| LogisticRegression | Model module: LogisticRegression |
| LonLatToCovariates | Create new covariates using latitude and longitude values |
| Lorem_ipsum_UK | A dataset of Lorem ipsum occurrences |
| MachineLearn | Model module: MachineLearn |
| malariaAtlas_covariates | Covariate module: malariaAtlas_covariates |
| malariaAtlas_PR | Occurrence module: malariaAtlas_PR |
| MaxEnt | Model module: MaxEnt |
| MaxLike | Model module: MaxLike |
| MaxNet | Model module: MaxNet |
| MESSMask | Process module: MESSMask |
| mgcv | Model module: mgcv |
| MyMaxLike | Model module: MyMaxLike |
| NaiveRandomPresence | Naive Random Presence |
| NaiveRandomPresenceAbsence | Naive Random Presence/Absence |
| NaiveRandomRaster | Naive Random Raster |
| NATrees | Occurrences for 21 tree species from North America |
| NCEP | Covariate module: NCEP |
| NoOutput | Do not create any output |
| NoProcess | Process module: NoProcess |
| NullModel | Null Model |
| OneHundredBackground | Process module: OneHundredBackground |
| OneThousandBackground | Process module: OneThousandBackground |
| OptGRaF | Model module: OptGRaF |
| PairPlot | Pair plot of covariates with correlation |
| PartitionDisc | PartitionDisc: Leave-one-disc-out cross-validation |
| PerformanceMeasures | Output module: PerformanceMeasures |
| PredictNewRasterMap | Output module: PredictNewRasterMap |
| PrintMap | Output module: PrintMap |
| PrintOccurrenceMap | Output module: PrintOccurrenceMap |
| QuickGRaF | Model module: QuickGRaF |
| RandomForest | Model module: RandomForest |
| ReliabilityPlot | Produces are relaibility plot with associate linear... |
| RemoveNAs | Process module: RemoveNAs |
| ResponseCurve | Output module: ResponseCurve |
| ResponseCurveViz | Conditional Plots |
| ResponsePlot | Plot predicted response curves along covariate gradients |
| ROCcurve | an ROC-curve with the AUC value plotted in the title |
| SameTimePlaceMap | Output module: SameTimePlaceMap |
| SeparatePA | two graphs showing the probabilies for presence and absence... |
| SpOcc | Occurrence module: SpOcc |
| spThin | Spatial thinning of Presence-only Data |
| StandardiseCov | Scale numeric covariates |
| StochasticLogisticRegression | StochasticLogisticRegression |
| SubsampleOccurrence | Process module: SubsampleOccurrence |
| SugarMaple | Sugar Maple distribution in North America |
| SurfaceMap | Output module: SurfaceMap |
| TargetGroupBackground | Target Group Background Data |
| Transform | Apply Transformations to Covariates |
| UKAir | Covariate module: UKAir |
| UKAnophelesPlumbeus | Occurrence module: UK Anopheles plumbeus data |
| UKBioclim | Covariate module: UKBioclim |
| VariableImportance | Variable Importance |
