Man pages for zoonproject/modules
Species Distribution Modelling Code Modules for the ZOON Package

addInteractionSet up interactions among covariates
AddRandomUniformPredictorsProcess module: AddRandomUniformPredictors
AirNCEPCovariate module: AirNCEP
AnophelesPlumbeusOccurrence module: AnophelesPlumbeus
AppifyAppify
AUCPlot estimated coefficients from LogisticRegression
BackgroundProcess module: Background
BackgroundAndCrossvalidProcess module: BackgroundAndCrossvalid
BioclimCovariate module: Bioclim
Bioclim_futureCovariate module: Bioclim_future
BiomodModelModel module: BiomodModel
BootstrapProcess module: Boostrap
CarolinaWrenPAPresence/absence data for the Carolina Wren in the USA
CarolinaWrenPOPresence-only data for the Carolina Wren in the USA
CarolinaWrenRastersCovariate rasters for the USA used in the Carolina Wren...
CarolinaWrenValidationPresence/absence validation data for the Carolina Wren in the...
CleanProcess module: Clean
CoefficientPlotPlot estimated coefficients from LogisticRegression
CovHistogramsHistograms of Covariate data
CrossvalidateProcess module: Crossvalidate
CWBZimbabweOccurrence module: coffee white stem borer surveys in...
DataSummaryOutput module: DataSummary
DomainModel module: Domain
GBMModel module: GBM
GenerateCovariateReportGenerate a data profiling report
InteractiveCovariateMapOutput module: InteractiveCovariateMap
InteractiveMapOutput module: InteractiveMap
InteractiveOccurrenceMapInteractive Occurrence Map
JitterOccurrenceAdd noise to occurrence coordinates
LocalOccurrenceDataOccurrence module: LocalOccurrenceData
LocalOccurrenceDataFrameOccurrence module: LocalOccurrenceDataFrame
LocalRasterCovariate module: LocalRaster
LogisticRegressionModel module: LogisticRegression
Lorem_ipsum_UKA dataset of Lorem ipsum occurrences
MachineLearnModel module: MachineLearn
MaxEntModel module: MaxEnt
MaxLikeModel module: MaxLike
MaxNetModel module: MaxNet
MESSMaskProcess module: MESSMask
mgcvModel module: mgcv
MyMaxLikeModel module: MyMaxLike
NaiveRandomPresenceNaive Random Presence
NaiveRandomPresenceAbsenceNaive Random Presence/Absence
NaiveRandomRasterNaive Random Raster
NATreesOccurrences for 21 tree species from North America
NCEPCovariate module: NCEP
NoOutputDo not create any output
NoProcessProcess module: NoProcess
NullModelNull Model
OneHundredBackgroundProcess module: OneHundredBackground
OneThousandBackgroundProcess module: OneThousandBackground
OptGRaFModel module: OptGRaF
PairPlotPair plot of covariates with correlation
PartitionDiscPartitionDisc: Leave-one-disc-out cross-validation
PerformanceMeasuresOutput module: PerformanceMeasures
PredictNewRasterMapOutput module: PredictNewRasterMap
PrintMapOutput module: PrintMap
PrintOccurrenceMapOutput module: PrintOccurrenceMap
QuickGRaFModel module: QuickGRaF
RandomForestModel module: RandomForest
ResponseCurveOutput module: ResponseCurve
ResponseCurveVizConditional Plots
ResponsePlotPlot predicted response curves along covariate gradients
ROCcurvean ROC-curve with the AUC value plotted in the title
SameTimePlaceMapOutput module: SameTimePlaceMap
SeparatePAtwo graphs showing the probabilies for presence and absence...
SpOccOccurrence module: SpOcc
spThinSpatial thinning of Presence-only Data
StandardiseCovScale numeric covariates
StochasticLogisticRegressionStochasticLogisticRegression
SubsampleOccurrenceProcess module: SubsampleOccurrence
SugarMapleSugar Maple distribution in North America
SurfaceMapOutput module: SurfaceMap
TargetGroupBackgroundTarget Group Background Data
TransformApply Transformations to Covariates
UKAirCovariate module: UKAir
UKAnophelesPlumbeusOccurrence module: UK Anopheles plumbeus data
UKBioclimCovariate module: UKBioclim
VariableImportanceVariable Importance
zoonproject/modules documentation built on Nov. 28, 2017, 2:06 p.m.