API for zunderlab/FLOWMAP
Graph-based visualizations of high-dimensional single-cell data across time
| Global functions | |
|---|---|
| AnnotateGraph | Source code |
| AnnotateMultiGraph | Source code |
| AnnotateSpecialGraph | Source code |
| Asinh | Source code |
| BaseBuildKNN | Source code |
| BuildFLOWMAPkNN | Source code |
| BuildFirstFLOWMAPkNN | Source code |
| BuildFirstMultiFLOWMAPkNN | Source code |
| BuildMultiFLOWMAPkNN | Source code |
| ChangeTimes | Source code |
| CheckDFModeMulti | Source code |
| CheckDFModeOne | Source code |
| CheckDFModeSingle | Source code |
| CheckDownsampleSettings | Source code |
| CheckModeMulti | Source code |
| CheckModeOne | Source code |
| CheckModeSingle | Source code |
| CheckSettings | Source code |
| ClusterFCS | Source code |
| ConnectSubgraphs | Source code |
| ConstructMultiFLOWMAPCluster | Source code |
| ConstructOneFLOWMAPCluster | Source code |
| ConstructSingleFLOWMAPCluster | Source code |
| ConstructVarAnnotate | Man page Source code |
| ConvertCharacterLabel | Source code |
| ConvertCharacterLabelSpecial | Source code |
| ConvertNumericLabel | Source code |
| ConvertOrigTime | Source code |
| ConvertToGraphML | Man page Source code |
| ConvertToPDF | Source code |
| ConvertVariables | Source code |
| DensClustering | Source code |
| DownsampleFCS | Man page Source code |
| DrawNormalizedEdgesKnn | Source code |
| ExportClusterTables | Source code |
| FLOWMAP | Man page Source code |
| FLOWMAPR | Man page |
| FLOWMAPcluster | Source code |
| FLOWMAPfromDF | Man page Source code |
| FirstConnectSubgraphs | Source code |
| ForceDirectedXY | Source code |
| GetConditionsfromDF | Source code |
| GetFCSNames | Man page Source code |
| GetLabelKeyfromDF | Source code |
| GetMultiFCSNames | Man page Source code |
| GetOrigTimesfromDF | Source code |
| HclustClustering | Source code |
| InitializeGraph | Source code |
| InitializeMultiGraph | Source code |
| KMeansClustering | Source code |
| KnnDensity | Source code |
| LaunchGUI | Man page Source code |
| LoadCleanFCS | Man page Source code |
| LoadMultiCleanFCS | Man page Source code |
| MakeFLOWMAPRFile | Source code |
| MakeOutFolder | Source code |
| MakePrintChar | Source code |
| MakePrintClusteringVar | Source code |
| MakePrintFiles | Source code |
| MakePrintNum | Source code |
| MakePrintVarAnnotate | Source code |
| MakePrintVarRemove | Source code |
| MultiClusterFCS | Source code |
| MultiDownsampleFCS | Source code |
| MultiFolderParseTimes | Source code |
| MultiListParseTimes | Source code |
| MultiUpsample | Source code |
| ParseTimes | Source code |
| PrintPanel | Source code |
| PrintSummary | Source code |
| PrintSummaryfromDF | Source code |
| ProcessConditions | Source code |
| RemodelFLOWMAPClusterList | Source code |
| RemoveExistingDensityAndClusterColumns | Source code |
| RemoveExistingTimeVar | Source code |
| RemoveRowNames | Source code |
| RestructureDF | Man page Source code |
| RunForceDirectedLayout | Source code |
| RunUMAPlayout | Man page Source code |
| StripTimesfromDF | Source code |
| StripTimesfromDFList | Source code |
| SuggestClusteringVar | Man page Source code |
| SuggestVarRemove | Man page Source code |
| Upsample | Source code |
| cosine.similarity.from.matrix | Source code |
| cosine.similarity.matrix | Source code |
