LG: Make linkage groups based on clustering
In jendelman/MapRtools: Tools for genetic mapping
LG R Documentation
Make linkage groups based on clustering
Description
Make linkage groups based on clustering
Usage
LG(LODmat, thresh = seq(2, 20, by = 2))
Arguments
LODmat
matrix of LOD scores for the marker bins
thresh
numeric vector of thresholds for clusterings
Details
If thresh is a numeric vector with multiple LOD thresholds, the function returns a plot showing the number of markers per LG. If thresh is a single value, the function returns a data frame with the LG assignment for each marker. LGs are numbered from the largest to smallest group.
Value
Either a ggplot2 object or data frame of linkage groups (see Details)
jendelman/MapRtools documentation built on April 12, 2025, 12:46 p.m.
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| LG | R Documentation |
Make linkage groups based on clustering
Description
Make linkage groups based on clustering
Usage
LG(LODmat, thresh = seq(2, 20, by = 2))
Arguments
LODmat |
matrix of LOD scores for the marker bins |
thresh |
numeric vector of thresholds for clusterings |
Details
If thresh is a numeric vector with multiple LOD thresholds, the function returns a plot showing the number of markers per LG. If thresh is a single value, the function returns a data frame with the LG assignment for each marker. LGs are numbered from the largest to smallest group.
Value
Either a ggplot2 object or data frame of linkage groups (see Details)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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