groupGO: Functional Profile of a gene set at specific GO level. Given...

In clusterProfiler: statistical analysis and visualization of functional profiles for genes and gene clusters

Description

Functional Profile of a gene set at specific GO level. Given a vector of genes, this function will return the GO profile at a specific level.

Usage

groupGO(
  gene,
  OrgDb,
  keyType = "ENTREZID",
  ont = "CC",
  level = 2,
  readable = FALSE
)

Arguments

gene	a vector of entrez gene id.
OrgDb	OrgDb
keyType	key type of input gene
ont	One of "MF", "BP", and "CC" subontologies.
level	Specific GO Level.
readable	if readable is TRUE, the gene IDs will mapping to gene symbols.

Value

A groupGOResult instance.

Author(s)

Guangchuang Yu http://guangchuangyu.github.io

See Also

groupGOResult-class, compareCluster

Examples

	data(gcSample)
	yy <- groupGO(gcSample[[1]], 'org.Hs.eg.db', ont="BP", level=2)
	head(summary(yy))
	#plot(yy)

clusterProfiler documentation built on Feb. 11, 2021, 2:02 a.m.