Description Usage Arguments Value Author(s) References
simplify output from enrichGO and gseGO by removing redundancy of enriched GO terms
simplify output from compareCluster by removing redundancy of enriched GO terms
| 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 | ## S4 method for signature 'enrichResult'
simplify(
  x,
  cutoff = 0.7,
  by = "p.adjust",
  select_fun = min,
  measure = "Wang",
  semData = NULL
)
## S4 method for signature 'gseaResult'
simplify(
  x,
  cutoff = 0.7,
  by = "p.adjust",
  select_fun = min,
  measure = "Wang",
  semData = NULL
)
## S4 method for signature 'compareClusterResult'
simplify(
  x,
  cutoff = 0.7,
  by = "p.adjust",
  select_fun = min,
  measure = "Wang",
  semData = NULL
)
 | 
| x | output of enrichGO | 
| cutoff | similarity cutoff | 
| by | feature to select representative term, selected by 'select_fun' function | 
| select_fun | function to select feature passed by 'by' parameter | 
| measure | method to measure similarity | 
| semData | GOSemSimDATA object | 
updated enrichResult object
updated compareClusterResult object
Guangchuang Yu
Gwang-Jin Kim and Guangchuang Yu
Guangchuang Yu
issue #28 https://github.com/GuangchuangYu/clusterProfiler/issues/28
issue #162 https://github.com/GuangchuangYu/clusterProfiler/issues/162
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