Facilitates the generation, documentation and comparision of codelists for identifying diagnoses, procedures, investigations and other events recorded for patients in CALIBER electronic health record data. The CALIBER programme is funded by the Wellcome Trust (086091/Z/08/Z) and the National Institute for Health Research (NIHR) under its Programme Grants for Applied Research programme (RP-PG-0407-10314). The author is supported by a Wellcome Trust Clinical Research Training Fellowship (0938/30/Z/10/Z).
|Author||Anoop Shah [aut, cre], Harry Hemingway [ths], Aroon Hingorani [ths], Owen Nicholas [ths], Spiros Denaxas [ctb], Harriet Forbes [ctb], Emily Herrett [ctb], Katherine Morley [ctb], Mar Pujades [ctb], Joshua Wallace [ctb]|
|Date of publication||2015-05-28 11:03:11|
|Maintainer||Anoop Shah <email@example.com>|
assigncat: Assign selected terms to a category
browsedict: Browse a selection, codelist or the master dictionary in a...
CALIBERcodelists-package: Generate ICD, Read and OPCS codelists
categories: Get and set categories table for the master dictionary
codelist: codelist: S3 class for lists of Read, OPCS or ICD-10 codes
codematch: Select ICD10, OPCS or Read codes matching a particular...
compare: Compare two codelists
contractCodelist: Contract and expand ICD-10 codelists according to the...
convert: Convert codelists between ICD-10, Read and OPCS
decode: Show term descriptions for ICD, OPCS or Read codes
DICT: The master dictionary containing the current selection of...
dictis: Which terms are in a particular dictionary
DICTMAPS: Mapping between OPCS / ICD-10 and Read terms
explode: Show terms not included in the selection but sharing the...
explore: Manage codelists and create a new codelist interactively
export: Export the codelists to the definitive .csv format or .dta...
GEM: General Equivalence Mappings from ICD-9-CM to ICD-10-CM and...
getCodelist: Find and import a codelist from a folder
loadDicts: Script to replace the source dictionaries used by...
logic: Logical operators for selection objects
logicSelection: Boolean operators for the S3 selection class
medcodeis: Select Read codes with particular medcode(s)
merge.codelist: Merge two codelists
META: Metadata for the master dictionary, stored in a data.table
print.selection: Prints the codes in a selection
process: Process an R Markdown file
PRODDICT: CPRD (GPRD) Product dictionary
selection: selection: S3 class for a list of Read, OPCS and/or ICD-10...
setdictionary: Get and set which dictionary or dictionaries to use
setMetadata: Set metadata for a codelist or the master dictionary
showhtml: Show the selected and excluded terms in HTML
stringFunctions: String functions
termhas: Select terms which contain a particular string