showhtml: Show the selected and excluded terms in HTML

In CALIBERcodelists: Generate ICD10, Read and OPCS codelists

Description

This is designed to be used within a R 'as is' section in a R Markdown (Rmd) document. It displays all the selected codes in the master dictionary by dictionary, as well as excluded terms (those with category 0) and terms with the same 3-character code which were not included (if show_not_selected is TRUE).

Usage

showhtml(show_not_selected = TRUE)

Arguments

show_not_selected

TRUE or FALSE, whether to show terms with the same three-character code but not included in the selected or excluded terms.

Details

Within a R Markdown document, the function should be called as follows:

“'r results='asis' showhtml() “'

This instructs knitr to enter the output of showhtml directly as HTML.

Value

A character vector of length 1, containing the HTML code fragment.

Note

In the table of categories with number of terms, ICD-10 headers are not included in the number of ICD-10 terms but the individual 4 and 5 character terms are included. This means that the number of terms is different from those displayed in the document (where headers and individual codes are shown separately) and in the final codelist (where only the 3-character header is included if all terms under that header are included in the same category).

See Also

as.codelist, export, exportall, process

Examples

setdictionary('read', 'icd10')
assigncat(1, 'rhabdomyo', termhas('rhabdomyolysis'))
assigncat(0, 'Excluded', termhas('renal'))
showhtml()

CALIBERcodelists documentation built on Feb. 28, 2020, 3:01 a.m.