FFD: Freedom from Disease

Functions, S4 classes/methods and a graphical user interface (GUI) to design surveys to substantiate freedom from disease using a modified hypergeometric function (see Cameron and Baldock, 1997). Herd sensitivities are computed according to sampling strategies "individual sampling" or "limited sampling" (see M. Ziller, T. Selhorst, J. Teuffert, M. Kramer and H. Schlueter, 2002). Methods to compute the a-posteriori alpha-error are implemented. Risk-based targeted sampling is supported.

AuthorIan Kopacka
Date of publication2015-02-24 16:41:43
MaintainerIan Kopacka <ian.kopacka@ages.at>
LicenseGPL (>= 2)
Version1.0-6
http://ffd.r-forge.r-project.org
http://www.ages.at

View on R-Forge

Functions

buildMySurvey Man page
chooseHerdSizeCol Man page
computeAlpha Man page
computeAlphaLimitedSampling Man page
computeAposterioriError Man page
computeAposterioriErrorRiskGroups Man page
computeDiseaseMatrix Man page
computeOptimalSampleSize Man page
computeOptimalSampleSizeRiskGroups Man page
computePValue Man page
computePValueRiskGroups Man page
computeSampleSizeInd Man page
createStyleFile Man page
FFD_GUI Man page
FFDmanual Man page
HTML,IndSampling-method Man page
HTML,IndSamplingSummary-method Man page
HTML,LtdSampling-method Man page
HTML,LtdSamplingSummary-method Man page
importDataFun Man page
indSampling Man page
IndSampling-class Man page
indSampling.internal Man page
indSamplingSummary Man page
IndSamplingSummary-class Man page
lls Man page
loadExample Man page
loadFFD Man page
ltdSampling Man page
LtdSampling-class Man page
ltdSampling.internal Man page
ltdSamplingSummary Man page
LtdSamplingSummary-class Man page
OnCalcDiag Man page
OnCalcSS Man page
onOkHerdSize Man page
OnSampleSS Man page
plot,IndSamplingSummary-method Man page
plot,LtdSamplingSummary-method Man page
plotWidget Man page
resetFFD Man page
roundConstantSum Man page
sampleFarms Man page
sample,IndSampling-method Man page
sample,LtdSampling-method Man page
saveFFD Man page
savePlot Man page
saveText Man page
sheepData Man page
show,IndSampling-method Man page
show,IndSamplingSummary-method Man page
show,LtdSampling-method Man page
show,LtdSamplingSummary-method Man page
show,SurveyData-method Man page
summary,IndSampling-method Man page
summary,IndSamplingSummary-method Man page
summary,LtdSampling-method Man page
summary,LtdSamplingSummary-method Man page
summary,SurveyData-method Man page
surveyData Man page
SurveyData-class Man page

Files

DESCRIPTION
NAMESPACE
R
R/FFD_GUI-internal.R R/FFD_GUI.R R/allClasses.R R/computeAlpha.R R/computeAlphaLimitedSampling.R R/computeAposterioriError.R R/computeAposterioriErrorRiskGroups.R R/computeDiseaseMatrix.R R/computeOptimalSampleSize.R R/computeOptimalSampleSizeRiskGroups.R R/computePValue.R R/computePValueRiskGroups.R R/computeSampleSizeInd.R R/createStyleFile.R R/indSampling-internal.R R/indSampling.R R/indSamplingSummary.R R/lls.R R/ltdSampling-internal.R R/ltdSampling.R R/ltdSamplingSummary.R R/roundConstantSum.R R/surveyData.R
build
build/vignette.rds
data
data/sheepData.RData
inst
inst/GUI_Logo.ppm
inst/GUI_Logo2.ppm
inst/GUI_Logo3.ppm
inst/GUI_Logo4.ppm
inst/doc
inst/doc/FFD-intro.R
inst/doc/FFD-intro.Rnw
inst/doc/FFD-intro.pdf
inst/sheepData.csv
man
man/FFD-internal.Rd man/FFD_GUI.Rd man/IndSampling-class.Rd man/IndSamplingSummary-class.Rd man/LtdSampling-class.Rd man/LtdSamplingSummary-class.Rd man/SurveyData-class.Rd man/computeAlpha.Rd man/computeAlphaLimitedSampling.Rd man/computeAposterioriError.Rd man/computeAposterioriErrorRiskGroups.Rd man/computeOptimalSampleSize.Rd man/computeOptimalSampleSizeRiskGroups.Rd man/computePValue.Rd man/computePValueRiskGroups.Rd man/indSampling.Rd man/indSamplingSummary.Rd man/lls.Rd man/ltdSampling.Rd man/ltdSamplingSummary.Rd man/sheepData.Rd man/surveyData.Rd
src
src/combNWrapper.c
src/combNsymmWrapper.c
vignettes
vignettes/FFD-intro-003.eps
vignettes/FFD-intro.Rnw
vignettes/FFD.bib
vignettes/GUI_Herd_Size.png
vignettes/GUI_Herd_Size2.png
vignettes/GUI_Parameters.png
vignettes/GUI_Risk_Data.png
vignettes/GUI_Risk_Group.png
vignettes/GUI_calc_both.png
vignettes/GUI_calc_ind.png
vignettes/GUI_calc_ind2.png
vignettes/GUI_calc_ind_risk.png
vignettes/GUI_calc_ltd.png
vignettes/GUI_diag_ltd1.png
vignettes/GUI_diag_ltd2.png
vignettes/GUI_fresh.png
vignettes/GUI_menu.png
vignettes/GUI_sample_ind1.png
vignettes/GUI_sample_ltd1.png
vignettes/GUI_sample_ltd2.png
vignettes/aPostError_ind7.pdf
vignettes/aPostError_ltd7.pdf

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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