*coseq* package instructions"

In coseq: Co-Expression Analysis of Sequencing Data

coseq is a package to perform clustering analysis of sequencing data (e.g., co-expression analysis of RNA-seq data). The package implements both Gaussian and Poisson mixtures model, performs parameter estimation using an expectation-maximization algorithm, and performs model selection using either the Integrated Completed Likelihood (ICL) criterion or the slope heuristics approach.

The full User's Guide for coseq may be found by installing the coseq package, loading it into an R session, and typing:

library(coseq)
coseqUsersGuide()

at the R prompt to open the User's Guide in a pdf viewer.

coseq documentation built on May 2, 2019, 4:55 p.m.