epiG: DNA methylation and SNP calling for bisulfite sequencing data

DNA methylation and SNP calling for bisulfite sequencing data.

AuthorMartin Vincent
Date of publication2015-05-22 10:05:07
MaintainerMartin Vincent <vincent@math.ku.dk>
LicenseGPL (>= 2)
Version1.0.0

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Files in this package

epiG/DESCRIPTION
epiG/NAMESPACE
epiG/R
epiG/R/epiG_config.R epiG/R/epiG_fetch.R epiG/R/epiG_haplo_fit.R epiG/R/epiG_locate.R epiG/R/epiG_navigate.R epiG/R/epiG_summary.R
epiG/man
epiG/man/chain.info.Rd epiG/man/chain.info.epiG.Rd epiG/man/compute_chunk_positions.Rd epiG/man/coverage.Rd epiG/man/coverage.epiG.Rd epiG/man/create_bisulfite_model.Rd epiG/man/create_error_distributions.Rd epiG/man/create_genotype_prior_alt.Rd epiG/man/create_genotype_prior_ref.Rd epiG/man/end.Rd epiG/man/end.epiG.Rd epiG/man/epiG.Rd epiG/man/epiG.algorithm.config.Rd epiG/man/epiG.chunks.Rd epiG/man/exp_decay.Rd epiG/man/fetch.reads.Rd epiG/man/fetch_alt.Rd epiG/man/fetch_reads_info.Rd epiG/man/fetch_ref.Rd epiG/man/genotype.Rd epiG/man/genotype.epiG.Rd epiG/man/length.epiG.Rd epiG/man/locate.DGCH.Rd epiG/man/locate.GCH.Rd epiG/man/locate.HCGD.Rd epiG/man/locate.SNP.Rd epiG/man/methylation.Rd epiG/man/methylation.epiG.Rd epiG/man/nchain.Rd epiG/man/nchain.epiG.Rd epiG/man/nchunks.Rd epiG/man/nchunks.epiG.Rd epiG/man/nread.Rd epiG/man/nread.epiG.Rd epiG/man/position.info.Rd epiG/man/position.info.epiG.Rd epiG/man/print.epiG.Rd epiG/man/print.epiG.config.Rd epiG/man/read.fasta.Rd epiG/man/read.info.Rd epiG/man/read.info.epiG.Rd epiG/man/start.Rd epiG/man/start.epiG.Rd epiG/man/strand.Rd epiG/man/strand.epiG.Rd epiG/man/subregion.Rd epiG/man/subregion.epiG.Rd epiG/man/symbols.Rd epiG/man/vector.search.Rd
epiG/src
epiG/src/Makevars
epiG/src/alignment_data.h
epiG/src/arma_additions.h
epiG/src/bam_reader.h
epiG/src/chain_opt.h
epiG/src/chunked_chain_opt.h
epiG/src/epiG.cpp
epiG/src/epiG_algorithm_config.h
epiG/src/genotype_opt.h
epiG/src/math_tools.h
epiG/src/prior.h
epiG/src/rinterface
epiG/src/rinterface/epiG.h
epiG/src/rinterface/fetch.h
epiG/src/rtools
epiG/src/rtools.h
epiG/src/rtools/get_value.h
epiG/src/rtools/omp_rwarnings.h
epiG/src/rtools/rList.h
epiG/src/rtools/rObject_decl.h
epiG/src/rtools/rObject_def.h
epiG/src/samtools
epiG/src/samtools/LICENSE
epiG/src/samtools/bam.c
epiG/src/samtools/bam.h
epiG/src/samtools/bam_aux.c
epiG/src/samtools/bam_endian.h
epiG/src/samtools/bam_import.c
epiG/src/samtools/bam_index.c
epiG/src/samtools/bam_sort.c
epiG/src/samtools/bgzf.c
epiG/src/samtools/bgzf.h
epiG/src/samtools/faidx.c
epiG/src/samtools/faidx.h
epiG/src/samtools/khash.h
epiG/src/samtools/kseq.h
epiG/src/samtools/ksort.h
epiG/src/samtools/kstring.c
epiG/src/samtools/kstring.h
epiG/src/samtools/razf.c
epiG/src/samtools/razf.h
epiG/src/samtools/sam.c
epiG/src/samtools/sam.h
epiG/src/samtools/sam_header.c
epiG/src/samtools/sam_header.h
epiG/src/seq_tools.h
epiG/src/simple_timer.h
epiG/src/types.h
epiG/src/vector_search.h

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