Description Usage Arguments Value Author(s)
Create a epiG configuration
1 2 3 4 5 6 7 8 | epiG.algorithm.config(ref.file, alt.file,
max_iterations = 1e+05,
prior = list(create_genotype_prior_ref(), create_genotype_prior_alt()),
model = create_bisulfite_model(),
sequence_quality_adjust = 0.1, haplo_prior = 0.2,
ref_prior = 0.9, min_overlap_length = 1,
chunk_size = 1000, chunk_method = "reads",
reads_hard_limit = 1500, verbose = TRUE)
|
ref.file |
|
alt.file |
|
max_iterations |
|
prior |
|
model |
|
sequence_quality_adjust |
|
haplo_prior |
modeled using a geometric distribution |
ref_prior |
|
min_overlap_length |
|
chunk_size |
|
chunk_method |
|
reads_hard_limit |
|
verbose |
epiG configuration
martin
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