Fit an epiG model

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Description

Fit an epiG model

Usage

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  epiG(filename, refname, start, end, max_threads = 8L,
    config, refGenom_filename = config$ref.filename,
    altGenom_filename = config$alt.filename)

Arguments

filename

BAM file with aligned and ordered reads

refGenom_filename
altGenom_filename
refname
start
end
max_threads
config

Value

fitted model

Author(s)

Martin Vincent

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