API for epiG
DNA methylation and SNP calling for bisulfite sequencing data

Global functions
chain.info Man page Source code
chain.info.epiG Man page Source code
compute_chunk_positions Man page Source code
coverage Man page Source code
coverage.epiG Man page Source code
create_bisulfite_model Man page Source code
create_error_distributions Man page Source code
create_genotype_prior_alt Man page Source code
create_genotype_prior_ref Man page Source code
end Man page Source code
end.epiG Man page Source code
epiG Man page Source code
epiG.algorithm.config Man page Source code
epiG.chunks Man page Source code
exp_decay Man page Source code
fetch.reads Man page Source code
fetch_alt Man page Source code
fetch_reads_info Man page Source code
fetch_ref Man page Source code
genotype Man page Source code
genotype.epiG Man page Source code
length.epiG Man page Source code
locate.DGCH Man page Source code
locate.GCH Man page Source code
locate.HCGD Man page Source code
locate.SNP Man page Source code
methylation Man page Source code
methylation.epiG Man page Source code
nchain Man page Source code
nchain.epiG Man page Source code
nchunks Man page Source code
nchunks.epiG Man page Source code
nread Man page Source code
nread.epiG Man page Source code
position.info Man page Source code
position.info.epiG Man page Source code
print.epiG Man page Source code
print.epiG.config Man page Source code
read.fasta Man page Source code
read.info Man page Source code
read.info.epiG Man page Source code
start Man page Source code
start.epiG Man page Source code
strand Man page Source code
strand.epiG Man page Source code
subregion Man page Source code
subregion.epiG Man page Source code
symbols Man page Source code
vector.search Man page Source code
epiG documentation built on May 31, 2017, 5:03 a.m.