Man pages for epiG
DNA methylation and SNP calling for bisulfite sequencing data

chain.infochain.info
chain.info.epiGchain.info
compute_chunk_positionsCompute chunk positions
coveragecoverage
coverage.epiGcoverage
create_bisulfite_modelcreate_bisulfite_model
create_error_distributionscreate_error_distributions
create_genotype_prior_altcreate_genotype_prior_alt
create_genotype_prior_refcreate_genotype_prior
endend position
end.epiGend
epiGFit an epiG model
epiG.algorithm.configCreate a epiG configuration
epiG.chunksepiG.chunks
exp_decayexp_decay
fetch_altfetch_alt
fetch.readsfetch_reads
fetch_reads_infofetch_reads_info
fetch_reffetch_ref
genotypegenotype
genotype.epiGgenotype codeing C = 1, G = 2, A = 3, T = 4
length.epiGLength of model in base pairs
locate.DGCHlocate DGCH positions
locate.GCHlocate GCH positions
locate.HCGDlocate HCGD positions
locate.SNPlocate SNP positions
methylationmethylation
methylation.epiGmethylation
nchainNumber of chains
nchain.epiGNumber of chains
nchunksNumber of chunks
nchunks.epiGNumber of chunks
nreadNumber of reads in model
nread.epiGNumber of reads in model
position.infoposition.info
position.info.epiGposition.info
print.epiGprint
print.epiG.configprint config
read.fastaRead fasta
read.inforead.info
read.info.epiGread.info
startstart position
start.epiGstart
strandstrand
strand.epiGstrand
subregionsubregion
subregion.epiGsubregion
symbolssymbols
vector.searchvector search
epiG documentation built on May 31, 2017, 5:03 a.m.