Files in epiG
DNA methylation and SNP calling for bisulfite sequencing data

DESCRIPTION
NAMESPACE
R
R/epiG_config.R R/epiG_fetch.R R/epiG_haplo_fit.R R/epiG_locate.R R/epiG_navigate.R R/epiG_summary.R
man
man/chain.info.Rd man/chain.info.epiG.Rd man/compute_chunk_positions.Rd man/coverage.Rd man/coverage.epiG.Rd man/create_bisulfite_model.Rd man/create_error_distributions.Rd man/create_genotype_prior_alt.Rd man/create_genotype_prior_ref.Rd man/end.Rd man/end.epiG.Rd man/epiG.Rd man/epiG.algorithm.config.Rd man/epiG.chunks.Rd man/exp_decay.Rd man/fetch.reads.Rd man/fetch_alt.Rd man/fetch_reads_info.Rd man/fetch_ref.Rd man/genotype.Rd man/genotype.epiG.Rd man/length.epiG.Rd man/locate.DGCH.Rd man/locate.GCH.Rd man/locate.HCGD.Rd man/locate.SNP.Rd man/methylation.Rd man/methylation.epiG.Rd man/nchain.Rd man/nchain.epiG.Rd man/nchunks.Rd man/nchunks.epiG.Rd man/nread.Rd man/nread.epiG.Rd man/position.info.Rd man/position.info.epiG.Rd man/print.epiG.Rd man/print.epiG.config.Rd man/read.fasta.Rd man/read.info.Rd man/read.info.epiG.Rd man/start.Rd man/start.epiG.Rd man/strand.Rd man/strand.epiG.Rd man/subregion.Rd man/subregion.epiG.Rd man/symbols.Rd man/vector.search.Rd
src
src/Makevars
src/alignment_data.h
src/arma_additions.h
src/bam_reader.h
src/chain_opt.h
src/chunked_chain_opt.h
src/epiG.cpp
src/epiG_algorithm_config.h
src/genotype_opt.h
src/math_tools.h
src/prior.h
src/rinterface
src/rinterface/epiG.h
src/rinterface/fetch.h
src/rtools
src/rtools.h
src/rtools/get_value.h
src/rtools/omp_rwarnings.h
src/rtools/rList.h
src/rtools/rObject_decl.h
src/rtools/rObject_def.h
src/samtools
src/samtools/LICENSE
src/samtools/bam.c
src/samtools/bam.h
src/samtools/bam_aux.c
src/samtools/bam_endian.h
src/samtools/bam_import.c
src/samtools/bam_index.c
src/samtools/bam_sort.c
src/samtools/bgzf.c
src/samtools/bgzf.h
src/samtools/faidx.c
src/samtools/faidx.h
src/samtools/khash.h
src/samtools/kseq.h
src/samtools/ksort.h
src/samtools/kstring.c
src/samtools/kstring.h
src/samtools/razf.c
src/samtools/razf.h
src/samtools/sam.c
src/samtools/sam.h
src/samtools/sam_header.c
src/samtools/sam_header.h
src/seq_tools.h
src/simple_timer.h
src/types.h
src/vector_search.h
epiG documentation built on May 31, 2017, 5:03 a.m.