R/mean.outbreaks.series.R

In epinetics: EpiNetics

`mean.outbreaks.series` <-
function (network, num.reps=10, num.points=10, make.plot=0){
    t.crit <- get.t.crit(network=network)
    if(make.plot!=0)
      curve(get.mean.outbreak(network=network, T=x), from=0, to=c(t.crit-t.crit/10))
    df <- data.frame()
    for(point in 1:num.points){
      print(paste("point",point,"of",num.points))
      trans <- (point/num.points)*(9*t.crit/10)
      sizes <- list()
      for(rep in 1:num.reps){
        sim.res <- simulate.epidemic(network=network, initial.infectious=c(1), T=trans)
        sizes[[rep]] <- sum(sim.res %v% "status" %in% "recovered")
      }
     df <- rbind(df, c(trans, mean(as.numeric(sizes))))
     if(make.plot!=0)
       points(trans, mean(as.numeric(sizes)))
    }
    df
  }