Man pages for gada
Genome Alteration Detection Algorithm (GADA)
| addGadaToAromaAffymetrix | Connect gada and aroma.affymetrix packages |
| BackwardElimination | Backward Elimination of segmentation breakpoints |
| discriminCNV | Discrimination Analysis for CNV data matrices |
| dudi.acm.fortran | Duality diagram for Multiple Correspondenc Analysis |
| exportToBED | Export segments to BED format |
| gada-internal | Internal gada functions |
| gada-package | Genome Alteration Detection Algorithm (GADA) |
| getAlteredProbes | Get Altered Probes |
| getChromosomeDat | Cromosome CNV Data |
| getNamesProbes | CNVs with highes correlations |
| getPvalBH | Corrected p values using Benjamini & Hochberg approach |
| getReducedData | Reduced matrix of CNV blocks across the whole genome |
| matrixPlot | Matrix image of CNV blocks |
| multiCNVassoc | Association between several CNVs and disease |
| parBE | Parallel Backward Elimination |
| parSBL | Parallel SBL segmentation |
| plotRatio | Plot log2Ratio intensities |
| plotWG | Plot Whole Genome |
| rankVariables | CNV ranking |
| reduceMatrix | Reduction of matrix of CNV segments |
| SBL | Sparse Bayesian Learning (SBL) Segmentation Algorithm |
| setupGADAaffy | Imports Affymetrix array data to gada |
| setupGADAgeneral | Imports general array data to gada |
| setupGADAIllumina | Imports Illumina array data to gada |
| setupParGADAaffy | Parallel version of setupGADAaffy |
| setupParGADAIllumina | Parallel version of setupGADAIllumina |
| splitDataBeadStudio | Split BeadStudio data |
