gada-internal: Internal gada functions

In gada: Genome Alteration Detection Algorithm (GADA)

Description

Internal gada functions

Usage

drawChromosome(chr, size = 0.05, limits, print.names=TRUE, ...)
drawChromosomeZoom(chr, size = 0.05, chromStart, chromEnd, print.names=TRUE, ...)
plotlogRatio(x, chr, chromStart, chromEnd, B.allele.freq=FALSE, num.points, postscript=FALSE, ylim, ...)
selectSegment(x, o)
collapseInfo(x)
WextIextToSegments(x)
SBL.fit(i,x,control,gen.info,chr,sigma2,aAlpha,maxit,tol,debug)
plapply(X, FUN, ...)
countAltered.i(i, x, max.number.cnv, length.base, gen.info,chr.lab)
findNormalLimits(x)
getProj(mat, pop, select=NULL, saveInfo=TRUE, type="acm",verbose=TRUE,...)
project.pop(dd,factor=FALSE,norm=FALSE, verbose=TRUE)
get.matrix(crom.data, probe.pos, verbose,size.min=500,size.max=1.e6)
get.index(pos,probe.pos)
assocCNV.i(x, formula, family=binomial, ...)

Details

These are not to be called by the user

gada documentation built on May 2, 2019, 6:10 p.m.