setupParGADAaffy: Parallel version of setupGADAaffy

In gada: Genome Alteration Detection Algorithm (GADA)

Description

This functions calls repeteadly to setupGADAaffy to import log2ratio intensities for several samples to gada

Usage

setupParGADAaffy(folder, files, verbose = TRUE, ...)

Arguments

folder	The folder where data is stored. Not required
files	The names of the files with Illumina data. Not required
verbose	Should information about process be printed in the console? The default is TRUE
...	Other arguments passed through 'setupGADAaffy'

Details

See setupGADAaffy

References

Pique-Regi R, Caceres A, Gonzalez JR. "R-Gada: a package for fast detection and visualization of copy number alterations on multiple samples", BMC Bioinformatics , Submitted Nov 2009

See Also

setupParGADAIllumina, parSBL, parBE, setupGADAaffy

Examples

## Not run: 
###
### First step (required)
### 

# Read data 
# a folder called rawData containing a file for each individual is required

# Affymetrix data
myExample<-setupParGADAaffy(log2ratioCol=4, NumCols=5)


## End(Not run)

gada documentation built on May 2, 2019, 6:10 p.m.