setupParGADAIllumina: Parallel version of setupGADAIllumina

In gada: Genome Alteration Detection Algorithm (GADA)

Description

This functions calls repeteadly to setupGADAIllumina to import log2ratio intensities for several samples to gada

Usage

setupParGADAIllumina(folder, files, XY=TRUE, verbose = TRUE, sort=TRUE, ...)

Arguments

folder	The folder where data is stored. Not required
files	The names of the files with Illumina data. Not required
XY	Do data have X and Y labels in annotation or 23 and 24? The default is TRUE
verbose	Should information about process be printed in the console? The default is TRUE
sort	Should data be sorted by genomic position? See argument 'sort' in setupGADAIllumina'
...	Other arguments passed through 'setupGADAIllumina'

Details

See setupGADAIllumina

References

Pique-Regi R, Caceres A, Gonzalez JR. "R-Gada: a package for fast detection and visualization of copy number alterations on multiple samples", BMC Bioinformatics , Submitted Nov 2009

See Also

setupParGADAIllumina, parSBL, parBE

Examples

## Not run: 
###
### First step (required)
### 

# Read data 
# a folder called rawData containing a file for each individual is required

# Illumina data
myExample<-setupParGADAIllumina(log2ratioCol=4, NumCols=5)

## End(Not run)

gada documentation built on May 2, 2019, 6:10 p.m.