gnw1565.data: Simulated Gene Expression Data

In grndata: Synthetic Expression Data for Gene Regulatory Network Inference

Description

Dataset containing 1565 samples and 1565 genes generated by the publicly available GNW generator using an ecoli source network with no added noise.

Usage

data(gnw1565.data)

Format

gnw1565.data is a data frame containing 1565 rows and 1565 columns. Each row contains a simulated microarray experiment and each column contains a gene. The dataset was generated with GNW generator which relies on ODEs for modeling gene regulation.

Value

data.frame containg the data.

Source

GNW v3.1 with source network : Ecoli

References

Schaffter, Thomas, Daniel Marbach, and Dario Floreano. "GeneNetWeaver: in silico benchmark generation and performance profiling of network inference methods." Bioinformatics 27.16 (2011): 2263-2270.

See Also

gnw1565.net, gnw2000.data, rogers1000.data, syntren300.data, syntren1000.data

Examples

    data(gnw1565.data)
    # Print size
    print(dim(gnw1565.data))

Example output

[1] 1565 1565

grndata documentation built on May 2, 2019, 4:53 p.m.