gnw2000.data: Simulated Gene Expression Data

In grndata: Synthetic Expression Data for Gene Regulatory Network Inference

Description

Dataset containing 2000 samples and 2000 genes generated by the publicly available GNW generator using a yeast source network with no added noise.

Usage

data(gnw2000.data)

Format

gnw2000.data is a data frame containing 2000 rows and 2000 columns. Each row contains a simulated microarray experiment and each column contains a gene. The dataset was generated with GNW generator which relies on ODEs for modeling gene regulation.

Value

data.frame containg the data.

Source

GNW v3.1 with source network : Yeast

References

Schaffter, Thomas, Daniel Marbach, and Dario Floreano. "GeneNetWeaver: in silico benchmark generation and performance profiling of network inference methods." Bioinformatics 27.16 (2011): 2263-2270.

See Also

gnw2000.net, gnw1565.data, rogers1000.data, syntren300.data, syntren1000.data

Examples

    data(gnw2000.data)
    # Print size
    print(dim(gnw2000.data))

grndata documentation built on May 2, 2019, 4:53 p.m.