maticce: Mapping Transitions in Continuous Character Evolution

Tools for an information-theoretic approach to estimating the probability of continuous character transitions on phylogenetic trees

AuthorAndrew Hipp <ahipp@mortonarb.org>, with contributions from Marcial Escudero
Date of publication2014-03-03 08:29:55
MaintainerAndrew Hipp <ahipp@mortonarb.org>
LicenseGPL-3
Version1.0-4
http://r-forge.r-project.org/projects/mattice/

View on R-Forge

Files in this package

maticce/DESCRIPTION
maticce/NAMESPACE
maticce/R
maticce/R/batchHansen.R maticce/R/informationCriterion.R maticce/R/multiModel.R maticce/R/ouSim.hansenBatch.R maticce/R/ouSim.ouchtree.R maticce/R/ouSim.phylo.R maticce/R/ouSimHead.R maticce/R/plot.ouSim.R maticce/R/regimes.R maticce/R/summarizingAnalyses.R maticce/R/treeTraversal.R
maticce/TODO
maticce/build
maticce/build/vignette.rds
maticce/data
maticce/data/carex.rda
maticce/inst
maticce/inst/VERSIONS
maticce/inst/doc
maticce/inst/doc/maticce.R
maticce/inst/doc/maticce.Rnw
maticce/inst/doc/maticce.pdf
maticce/man
maticce/man/carex.Rd maticce/man/informationCriterion.Rd maticce/man/isMonophyletic.Rd maticce/man/multiModel.Rd maticce/man/ouSim.Rd maticce/man/paintBranches.Rd maticce/man/plot.ouSim.Rd maticce/man/regimeMaker.Rd maticce/man/regimeMatrix.Rd maticce/man/regimeVectors.Rd maticce/man/runBatchHansen.Rd maticce/man/summary.hansenBatch.Rd
maticce/misc
maticce/misc/OLDregimes.R
maticce/misc/batchHansenVignette.Rnw
maticce/misc/carex.R
maticce/misc/carex.rda
maticce/misc/chromo.txt
maticce/misc/multiModels-dataFormat.csv
maticce/misc/nodes.R
maticce/misc/oldRegimeMatrix.R
maticce/misc/originalApeToOuch_NU.R
maticce/misc/originalBatchHansenFit.R
maticce/misc/ouSim.ouchtree-2jun09WorkingSnap-versionFromTextfileSVN.R
maticce/misc/ouSim.ouchtree-2jun09WorkingSnap.R
maticce/misc/preorderOU-29may09.snapshot
maticce/misc/taxonSets.R
maticce/misc/timingRegimeMatrix.txt
maticce/vignettes
maticce/vignettes/maticce.Rnw

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