Summarize output from runBatchHansen
Description
summary.hansenBatch
is a summary method for a hansenBatch
object.
print.hansenSummary
is a print method for a hansenSummary
object.
Usage
1 2 3 4 
Arguments
object 
Output from 
ic 
Choice of information criterion to use in modelaveraging of parameters. Choices are 
x 
Output from 
... 
Additional arguments to 
Details
summary.hansenBatch
averages parameters over models and over trees, and provides the cumulative
informationcriterion weight for models containing each node as an estimate of the support for the hypothesis
that there was a character shift at that node.
print.hansenSummary
provides an easytoread synopsis of the analysis summary. Called automatically when you simply type
in the name of the summary object.
Value
For summary.hansenBatch
, a list of class hansenSummary
with the following items:
modelsMatrix 
A list of matrices, indexed by tree, providing the information criterion weights for each model. 
nodeWeightsMatrix 
A list of length two with two matrices:

modelAvgAlpha 
The modelaveraged estimate of 
modelAvgSigmaSq 
The modelaveraged estimate of 
thetaMatrix 
A matrix with trees as the rows, branch number as the columns, containing the modelaveraged value of 
Author(s)
Andrew Hipp ahipp@mortonarb.org
See Also
carex
for an example