regimeVectors: Paint all possible regimes
In maticce: Mapping Transitions in Continuous Character Evolution

Description Usage Arguments Details Value Author(s) See Also

Creates all regimes possible for the nodes specified on the trees provided, returning for each tree only those regimes that are present on that tree, and

1	regimeVectors(ouchTrees, cladeMembersList, maxNodes = NULL)

`ouchTrees`	A list of S4 `ouchtree` objects
`cladeMembersList`	A list of taxa defining nodes.
`maxNodes`	The maximum number of nodes at which a regime may change.

regimeVectors is the basic call to get all regime permutations for analysis in batchHansen.

A list with three items:

`regList`	A list (by tree) of lists of regimes that can be input directly into `hansen`.
`nodeMatrix`	A matrix indicating which nodes are presentin each tree.
`regMatrix`	A list (by tree) of matrices indicating which nodes are present in each model.