isMonophyletic: Test whether a set of taxa is monophyletic on an ouch-style...
In maticce: Mapping Transitions in Continuous Character Evolution
Description
Usage
Arguments
Value
Author(s)
View source: R/treeTraversal.R
Description
A somewhat clunky monophyly-checker for an ouchtree object
Usage
1
2
3
isMonophyletic(tree, taxa)
nodeDescendents(tree, startNode)
mrcaOUCH(cladeVector, tree)
Arguments
tree
An ouchtree object.
taxa
A vector of taxon names.
startNode
The node of interest; nomenclature follows tree@nodes.
cladeVector
A vector of tip labels.
Value
isMonophyletic
Boolean, TRUE if taxa form a monophyletic group, FALSE if not.
mrcaOUCH
A single node label; one of the items in tree@nodes.
nodeDescendents
A vector of tip labels.
Author(s)
Andrew Hipp ahipp@mortonarb.org
maticce documentation built on May 2, 2019, 6:13 p.m.
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Description Usage Arguments Value Author(s)
View source: R/treeTraversal.R
Description
A somewhat clunky monophyly-checker for an ouchtree object
Usage
1 2 3 | isMonophyletic(tree, taxa)
nodeDescendents(tree, startNode)
mrcaOUCH(cladeVector, tree)
|
Arguments
tree |
An |
taxa |
A vector of taxon names. |
startNode |
The node of interest; nomenclature follows |
cladeVector |
A vector of tip labels. |
Value
isMonophyletic |
Boolean, TRUE if taxa form a monophyletic group, FALSE if not. |
mrcaOUCH |
A single node label; one of the items in |
nodeDescendents |
A vector of tip labels. |
Author(s)
Andrew Hipp ahipp@mortonarb.org
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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