Files in qfa
Tools for Quantitative Fitness Analysis (QFA) of Arrayed Microbial Cultures Growing on Solid Agar Surfaces
NAMESPACE
DESCRIPTION
build/vignette.rds
R/Visualisation.R
R/reports.R
R/stripSGA.R
R/compareFitnesses.R
R/qfa.R
R/filteringGenes.R
R/Exponential.R
R/visualiseCurves.R
R/rodRead.R
R/Profiling.R
R/colonyRead.R
demo/fittingGrowthCurves.R
demo/00Index
demo/telomereCap.R
vignettes/RatioPlot0002.png
vignettes/iRVis.Rmd
vignettes/QFAVisualisation0002.png
vignettes/QFAVisualisation0003.png
vignettes/RatioPlot0005.png
vignettes/RatioPlot0002a.png
vignettes/RatioPlot0001.png
vignettes/RatioPlot0006.png
vignettes/qfa.Snw
vignettes/RatioPlot0007.png
vignettes/RatioPlot0004.png
vignettes/RatioPlot0003.png
vignettes/QFAVisualisation0001.png
vignettes/RatioPlot0008.png
man/makeBoundsQFA.Rd
man/logist.Rd
man/mdrmdp.Rd
man/report.epi.Rd
man/pgis.Rd
man/qfa.epi.Rd
man/readSGD.Rd
man/readMer.Rd
man/plateBoxplots.Rd
man/getDeadLocations.Rd
man/visTool.Rd
man/getMissingSGA.Rd
man/showDemo.Rd
man/qfa.plot.Rd
man/iRVisDemo.Rd
man/numerical_r.Rd
man/datafit.Rd
man/loapproxfun.Rd
man/mdp.Rd
man/getNeighbours.Rd
man/fitnessReport.Rd
man/Glogist.Rd
man/rod.read.Rd
man/mdr.Rd
man/normalisePlates.Rd
man/qfa.fit.Rd
man/qfa.epiplot.Rd
man/checkTarg.Rd
man/makeFitness.Rd
man/qfa-Internal.Rd
man/numericalfitness.Rd
man/dtl.Rd
man/getMissingGenotypes.Rd
man/correlationReport.Rd
man/growthcurve.Rd
man/colonyzer.read.Rd
man/rod.write.Rd
inst/doc/iRVis.Rmd
inst/doc/iRVis.html
inst/doc/qfa.pdf
inst/doc/qfa.Snw
inst/extdata/pombeGOAnnotation.dat
inst/extdata/FunctionalComplexes.txt
inst/extdata/GenerateDemoFiles.R
inst/extdata/SGD_features.tab
inst/extdata/URA3ExptDescription.txt
inst/extdata/DAL_QFA0140_cdc13-1_27_SDM_rhlk_CTGH_vs_QFA0141_ura3_27_SDM_rhk_CTGN_MDRMDP_GIS.txt
inst/extdata/pombeGOAnnotation.txt
inst/extdata/cdc13-1ExptDescription.txt
inst/extdata/DAL_QFA0141_ura3_27_SDM_rhk_CTGN_vs_QFA0141_ura3_20_SDM_rhk_CTGN_MDRMDP_GIS.txt
inst/extdata/DAL_QFA0139_Yku70_23_SDM_rhk_CTGN_vs_QFA0141_ura3_20_SDM_rhk_CTGN_MDRMDP_GIS.txt
inst/extdata/cdc13-1Query.dat
inst/extdata/URA3Control.dat
inst/extdata/DAL_QFA0139_Yku70_37_5_SDM_rhk_CTGN_vs_QFA0141_ura3_37_SDM_rhk_CTGN_MDRMDP_GIS.txt
inst/extdata/GOAnnotation.txt
inst/extdata/DAL_QFA0140_cdc13-1_36_SDM_rhlk_CTGH_vs_QFA0141_ura3_37_SDM_rhk_CTGN_MDRMDP_GIS.txt
inst/extdata/DAL_QFA0139_Yku70_30_SDM_rhk_CTGN_vs_QFA0141_ura3_27_SDM_rhk_CTGN_MDRMDP_GIS.txt
inst/extdata/LibraryDescription.txt
inst/extdata/DAL_QFA0139_Yku70_37_SDM_rhk_CTGN_vs_QFA0141_ura3_37_SDM_rhk_CTGN_MDRMDP_GIS.txt
inst/extdata/DAL_QFA0141_ura3_37_SDM_rhk_CTGN_vs_QFA0141_ura3_20_SDM_rhk_CTGN_MDRMDP_GIS.txt
inst/extdata/DAL_QFA0140_cdc13-1_20_SDM_rhlk_CTGH_vs_QFA0141_ura3_20_SDM_rhk_CTGN_MDRMDP_GIS.txt
inst/extdata/ORF2GENE.txt
