fitnessReport: Fitness Report
In qfa: Tools for Quantitative Fitness Analysis (QFA) of Arrayed Microbial Cultures Growing on Solid Agar Surfaces
Description
Summarises mean and median fitnesses for all orfs in qfa.fit object, and writes them to file with an appropriate header.
Arguments
treatment
Fitnesses are filtered by this value in the qfa.fit treatment column before summaries are generated.
outputfile
Output file name.
dataframe
Dataframe containing fitnesses to be summarised. Typically output from qfa.fit function. Must add a "fit" column before passing to this function.
fdef
Fitness definition used (e.g. "nAUC","MDR","r").
Value
Writes summary fitnesses to file with header containing some metadata.
qfa documentation built on Feb. 22, 2020, 3:01 a.m.
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Description
Summarises mean and median fitnesses for all orfs in qfa.fit object, and writes them to file with an appropriate header.
Arguments
treatment |
Fitnesses are filtered by this value in the qfa.fit treatment column before summaries are generated. |
outputfile |
Output file name. |
dataframe |
Dataframe containing fitnesses to be summarised. Typically output from qfa.fit function. Must add a "fit" column before passing to this function. |
fdef |
Fitness definition used (e.g. "nAUC","MDR","r"). |
Value
Writes summary fitnesses to file with header containing some metadata.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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