Correlation Report

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Description

Generates all possible fitness correlation plots, on a plate-by-plate basis, comparing all possible combinations of replicates for a given medium, treatment and plate number. Useful tool for searching for incorrect plate orientation, or misplaced/mislabelled plates. Can also give clues about plates with incorrect medium.

Usage

1
correlationReport(scrnms,dataframe,outputfile,aw=4,ah=4,fitmax=185)

Arguments

dataframe

Dataframe containing fitnesses to be summarised. Typically output from qfa.fit function. Must add a "fit" column before passing to this function.

outputfile

Output file name.

scrnms

Screen names to test for correlation problems

fitmax

Upper limit for both x and y axes in correlation plots. Maximum observable fitness for this combination of experiments and fitness definitions.

aw

Number of horizontal panels per page in output report.

ah

Number of vertical panels per page in output report.

Value

Generates a multi-page .pdf report demonstrating two-way between-replicate correlation for all possible pairs of plates and for all media, treatments and replicates in a QFA experiment.

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