mdp: Maximum Doubling Potential (MDP) for Generalised Logistic...
In qfa: Tools for Quantitative Fitness Analysis (QFA) of Arrayed Microbial Cultures Growing on Solid Agar Surfaces
Description
Calculates the Generalised Logistic Model (http://en.wikipedia.org/wiki/Generalised_logistic_function) version of the Maximum Doubling Potential as presented in Addinall et al. 2011 (http://www.plosgenetics.org/doi/pgen.1001362). MDP is the number of doublings undergone by the culture population from the inoculum density (g) to carrying capcity (K) throughout the experiment.
Usage
1
mdp(K,r,g,v)
Arguments
K
Culture carrying capacity (AU). Same units as (normalised) cell density observed in growth curve.
r
Culture growth rate parameter (per day).
g
Inoculum denisty (AU). Same units as (normalised) cell density observed in growth curve.
v
Shape parameter. Recover logistic model with v = 0.
qfa documentation built on Feb. 22, 2020, 3:01 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description
Calculates the Generalised Logistic Model (http://en.wikipedia.org/wiki/Generalised_logistic_function) version of the Maximum Doubling Potential as presented in Addinall et al. 2011 (http://www.plosgenetics.org/doi/pgen.1001362). MDP is the number of doublings undergone by the culture population from the inoculum density (g) to carrying capcity (K) throughout the experiment.
Usage
1 | mdp(K,r,g,v)
|
Arguments
K |
Culture carrying capacity (AU). Same units as (normalised) cell density observed in growth curve. |
r |
Culture growth rate parameter (per day). |
g |
Inoculum denisty (AU). Same units as (normalised) cell density observed in growth curve. |
v |
Shape parameter. Recover logistic model with v = 0. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.