seqinr: Biological Sequences Retrieval and Analysis
Version 3.3-7

Exploratory data analysis and data visualization for biological sequence (DNA and protein) data. Includes also utilities for sequence data management under the ACNUC system.

Browse man pages Browse package API and functions Browse package files

AuthorDelphine Charif [aut], Olivier Clerc [ctb], Carolin Frank [ctb], Jean R. Lobry [aut, cph], Anamaria Necşulea [ctb], Leonor Palmeira [ctb], Simon Penel [cre], Guy Perrière [ctb]
Date of publication2017-04-24 13:35:30
MaintainerSimon Penel <simon.penel@univ-lyon1.fr>
LicenseGPL (>= 2)
Version3.3-7
URL http://seqinr.r-forge.r-project.org/
Package repositoryView on R-Forge
InstallationInstall the latest version of this package by entering the following in R:
install.packages("seqinr", repos="http://R-Forge.R-project.org")

Man pages

a: Converts amino-acid three-letter code into the one-letter one
aaa: Converts amino-acid one-letter code into the three-letter one
aacost: Aerobic cost of amino-acids in Escherichia coli and G+C...
aaindex: List of 544 physicochemical and biological properties for the...
AAstat: To Get Some Protein Statistics
acnucopen: open and close a remote access to an ACNUC database
al2bp: To Convert a forensic microsatellite allele name into its...
alllistranks: To get the count of existing lists and all their ranks on...
amb: Expansion of IUPAC nucleotide symbols
AnoukResult: Expected numeric results for Ka and Ks computation
as.alignment: Constructor for class alignment
as.matrix.alignment: as.matrix.alignment
autosocket: Returns a socket to the last opened database
baselineabif: Estimation of baseline value
bma: Computing an IUPAC nucleotide symbol
c2s: conversion of a vector of chars into a string
cai: Codon Adaptation Index
caitab: Codon Adaptation Index (CAI) w tables
chargaff: Base composition in ssDNA for 7 bacterial DNA
choosebank: To select a database structured under ACNUC and located on...
circle: Draws a circle
closebank: To close a remote ACNUC database
clustal: Example of results obtained after a call to read.alignment
col2alpha: To use a standard color with an alpha transparency chanel
comp: complements a nucleic acid sequence
computePI: To Compute the Theoretical Isoelectric Point
consensus: Consensus and profiles for sequence alignments
count: Composition of dimer/trimer/etc oligomers
countfreelists: The number of free lists available and annotation lines in an...
countsubseqs: Number of subsequences in an ACNUC list
crelistfromclientdata: To create on server an ACNUC list from data lines sent by...
dia.bactgensize: Distribution of bacterial genome size from GOLD
dinucl: Mean zscore on 242 complete bacterial chromosomes
dist.alignment: Pairwise Distances from Aligned Protein or DNA/RNA Sequences
dotchart.uco: Cleveland plot for codon usage tables
dotPlot: Dot Plot Comparison of two sequences
draw.oriloc: Graphical representation for nucleotide skews in prokaryotic...
draw.rearranged.oriloc: Graphical representation for rearranged nucleotide skews in...
draw.recstat: Graphical representation of a recstat analysis.
ec999: 999 coding sequences from E. coli
ECH: Forensic Genetic Profile Allelic Ladder Raw Data
EXP: Vectors of coefficients to compute linear forms.
extract.breakpoints: Extraction of breakpoint positions on the rearranged...
extractseqs: To extract the sequences information of a sequence or a list...
fasta: Example of results obtained after a call to read.alignment
fastacc: Fast Allele in Common Count
gb2fasta: Conversion of GenBank file into fasta file
gbk2g2: Conversion of a GenBank format file into a glimmer-like one
gbk2g2.euk: Conversion of a GenBank format file into a glimmer-like one....
GC: Calculates the fractional G+C content of nucleic acid...
gcO2: GC content and aerobiosis in bacteria
gcT: GC content and temperature in bacteria
getAnnot: Generic Function to get sequence annotations
get.db.growth: Get the exponential growth of nucleic acid database content
getFrag: Generic function to extract sequence fragments
getKeyword: Generic function to get keywords associated to sequences
getLength: Generic function to get the length of sequences
getlistrank: To get the rank of a list from its name
getliststate: Asks for information about an ACNUC list of specified rank
getLocation: Generic function to get the location of subsequences on the...
getName: Generic function to get the names of sequences
get.ncbi: Bacterial complete genome data from ncbi ftp site
getSequence: Generic function to get sequence data
getTrans: Generic function to translate coding sequences into proteins
getType: To get available subsequence types in an opened ACNUC...
gfrag: Extract sequence identified by name or by number from an...
ghelp: Get help from an ACNUC server
gs500liz: GS500LIZ size standards
identifiler: Identifiler allele names
isenum: Get the ACNUC number of a sequence from its name or accession...
JLO: Forensic Genetic Profile Raw Data
kaks: Ka and Ks, also known as dn and ds, computation
knowndbs: Description of databases known by an ACNUC server
lseqinr: To see what's inside the package seqinr
m16j: Fragment of the E. coli chromosome
mase: Example of results obtained after a call to read.alignment
modifylist: Modification of an ACNUC list
move: Rename an R object
msf: Example of results obtained after a call to read.alignment
n2s: function to convert the numeric encoding of a DNA sequence...
oriloc: Prediction of origin and terminus of replication in bacteria.
parser.socket: Utility function to parse answers from an ACNUC server
peakabif: Extraction of Peak locations, Heights and Surfaces from ABIF...
permutation: Sequence permutation according to several different models
phylip: Example of results obtained after a call to read.alignment
pK: pK values for the side chain of charged amino acids from...
plotabif: Electrophoregram plot for ABIF data
plotladder: Simple plot of an allelic ladder from ABIF data
plotPanels: Representation of Amplicon Size Ranges of a STR kit.
plot.SeqAcnucWeb: To Plot Subsequences on the Parent Sequence
pmw: Protein Molecular Weight
prepgatannots: Select annotation lines in an ACNUC database
prettyseq: Text representation of a sequence from an ACNUC server
print.qaw: Print method for objects from class qaw
print.SeqAcnucWeb: Print method for objects from class SeqAcnucWeb
prochlo: Zscore on three strains of Prochlorococcus marinus
query: To get a list of sequence names from an ACNUC data base...
read.abif: Read ABIF formatted files
read.alignment: Read aligned sequence files in mase, clustal, phylip, fasta...
readBins: Import GenMapper Bins configuration file
read.fasta: read FASTA formatted files
readfirstrec: Low level function to get the record count of the specified...
readPanels: Import GenMapper Panels configuration file
readsmj: Low level function to read ACNUC SMJYT index files
rearranged.oriloc: Detection of replication-associated effects on base...
recstat: Prediction of Coding DNA Sequences.
residuecount: Total number of residues in an ACNUC list
revaligntest: Three aligned nucleic acid sequences
reverse.align: Reverse alignment - from protein sequence alignment to...
rot13: Ergheaf gur EBG-13 pvcurevat bs n fgevat
s2c: conversion of a string into a vector of chars
s2n: simple numerical encoding of a DNA sequence.
savelist: Save sequence names or accession numbers into a file
SeqAcnucWeb: Sequence coming from a remote ACNUC data base
SeqFastaAA: AA sequence in Fasta Format
SeqFastadna: Class for DNA sequence in Fasta Format
SeqFrag: Class for sub-sequences
seqinr-package: Biological Sequences Retrieval and Analysis
SEQINR.UTIL: utility data for seqinr
setlistname: Sets the name of an ACNUC list identified by its rank
splitseq: split a sequence into sub-sequences
stresc: Utility function to escape LaTeX special characters present...
stutterabif: Stutter ratio estimation
swap: Exchange two R objects
syncodons: Synonymous codons
synsequence: Random synonymous coding sequence generation
tablecode: to plot genetic code as in textbooks
test.co.recstat: Tests if regions located between Stop codons contain putative...
test.li.recstat: Tests if regions located between Stop codons contain putative...
toyaa: A toy example of amino-acid counts in three proteins
toycodon: A toy example of codon counts in three coding sequences
translate: Translate nucleic acid sequences into proteins
trimSpace: Trim leading and/or trailing spaces in strings
uco: Codon usage indices
ucoweight: Weight of each synonymous codon
waterabs: Light absorption by the water column
where.is.this.acc: Scans databases for a given sequence accession number
words: To get all words from an alphabet.
words.pos: Positions of possibly degenerated motifs within sequences
write.fasta: Write sequence(s) into a file in fasta format
zscore: Statistical over- and under- representation of dinucleotides...

Functions

AAstat Man page Source code
AnoukResult Man page
ECH Man page
EXP Man page
FASTA Man page
GC Man page Source code
GC1 Man page Source code
GC2 Man page Source code
GC3 Man page Source code
GCpos Man page Source code
JLO Man page
SEQINR.UTIL Man page
SeqAcnucWeb Man page
SeqFastaAA Man page
SeqFastadna Man page
SeqFrag Man page
a Man page Source code
aaa Man page Source code
aacost Man page
aaindex Man page
acnucclose Man page Source code
acnucopen Man page Source code
al2bp Man page Source code
alllistranks Man page Source code
alr Man page
amb Man page Source code
as.SeqAcnucWeb Man page Source code
as.SeqFastaAA Man page Source code
as.SeqFastadna Man page Source code
as.SeqFrag Man page Source code
as.alignment Man page Source code
as.matrix.alignment Man page Source code
autosocket Man page Source code
baselineabif Man page Source code
bma Man page Source code
c2s Man page Source code
cai Man page Source code
caitab Man page
cfl Man page
chargaff Man page
choosebank Man page Source code
circle Man page Source code
clfcd Man page
clientid Man page Source code
closebank Man page Source code
clustal Man page
col2alpha Man page Source code
comp Man page Source code
computePI Man page Source code
con Man page
consensus Man page Source code
count Man page Source code
countfreelists Man page Source code
countsubseqs Man page Source code
crelistfromclientdata Man page Source code
css Man page
dia.bactgensize Man page Source code
dia.db.growth Man page Source code
dinucl Man page
dist.alignment Man page Source code
dotPlot Man page Source code
dotchart.uco Man page Source code
draw.oriloc Man page Source code
draw.rearranged.oriloc Man page Source code
draw.recstat Man page Source code
ec999 Man page
exseq Man page
extract.breakpoints Man page Source code
extractseqs Man page Source code
fasta Man page
fastacc Man page Source code
gb2fasta Man page Source code
gbk2g2 Man page Source code
gbk2g2.euk Man page Source code
gcO2 Man page
gcT Man page
get.db.growth Man page Source code
get.ncbi Man page Source code
getAnnot Man page Source code
getAnnot.SeqAcnucWeb Man page Source code
getAnnot.SeqFastaAA Man page
getAnnot.SeqFastadna Man page Source code
getAnnot.default Man page Source code
getAnnot.list Man page Source code
getAnnot.logical Man page Source code
getAnnot.qaw Man page Source code
getAttributsocket Man page Source code
getFrag Man page Source code
getFrag.SeqAcnucWeb Man page Source code
getFrag.SeqFastaAA Man page
getFrag.SeqFastadna Man page Source code
getFrag.SeqFrag Man page Source code
getFrag.character Man page Source code
getFrag.default Man page Source code
getFrag.list Man page Source code
getFrag.logical Man page Source code
getFrag.qaw Man page Source code
getKeyword Man page Source code
getKeyword.SeqAcnucWeb Man page Source code
getKeyword.default Man page Source code
getKeyword.list Man page Source code
getKeyword.logical Man page Source code
getKeyword.qaw Man page Source code
getLength Man page Source code
getLength.SeqAcnucWeb Man page Source code
getLength.SeqFastaAA Man page
getLength.SeqFastadna Man page Source code
getLength.SeqFrag Man page Source code
getLength.character Man page Source code
getLength.default Man page Source code
getLength.list Man page Source code
getLength.logical Man page Source code
getLength.qaw Man page Source code
getLocation Man page Source code
getLocation.SeqAcnucWeb Man page Source code
getLocation.default Man page Source code
getLocation.list Man page Source code
getLocation.logical Man page Source code
getLocation.qaw Man page Source code
getName Man page Source code
getName.SeqAcnucWeb Man page Source code
getName.SeqFastaAA Man page
getName.SeqFastadna Man page Source code
getName.SeqFrag Man page Source code
getName.default Man page Source code
getName.list Man page Source code
getName.logical Man page Source code
getName.qaw Man page Source code
getNumber.socket Man page Source code
getSequence Man page Source code
getSequence.SeqAcnucWeb Man page Source code
getSequence.SeqFastaAA Man page
getSequence.SeqFastadna Man page Source code
getSequence.SeqFrag Man page
getSequence.character Man page Source code
getSequence.default Man page Source code
getSequence.list Man page Source code
getSequence.logical Man page Source code
getSequence.qaw Man page Source code
getTrans Man page Source code
getTrans.SeqAcnucWeb Man page Source code
getTrans.SeqFastadna Man page Source code
getTrans.SeqFrag Man page
getTrans.character Man page Source code
getTrans.default Man page Source code
getTrans.list Man page Source code
getTrans.logical Man page Source code
getTrans.qaw Man page Source code
getType Man page Source code
getlistrank Man page Source code
getliststate Man page Source code
gfrag Man page Source code
ghelp Man page Source code
gln Man page Source code
glr Man page
gls Man page
gs500liz Man page
identifiler Man page
is.SeqAcnucWeb Man page Source code
is.SeqFastaAA Man page Source code
is.SeqFastadna Man page Source code
is.SeqFrag Man page Source code
isenum Man page Source code
isn Man page Source code
kaks Man page Source code
kdb Man page
knowndbs Man page Source code
lseqinr Man page Source code
m16j Man page
mase Man page
modifylist Man page Source code
move Man page Source code
msf Man page
mv Man page
n2s Man page Source code
ncbi.fna.url Man page Source code
ncbi.gbk.url Man page Source code
ncbi.ptt.url Man page Source code
ncbi.stats Man page Source code
oriloc Man page Source code
pK Man page
parser.socket Man page Source code
peakabif Man page Source code
permutation Man page
pga Man page
phylip Man page
plot.SeqAcnucWeb Man page Source code
plotPanels Man page Source code
plotabif Man page Source code
plotladder Man page Source code
pmw Man page Source code
prepgetannots Man page Source code
prettyseq Man page Source code
print.SeqAcnucWeb Man page Source code
print.qaw Man page Source code Source code Source code
prochlo Man page
query Man page Source code
quitacnuc Man page Source code
read.abif Man page Source code
read.alignment Man page Source code
read.fasta Man page Source code
readAnnots.socket Man page
readBins Man page Source code
readPanels Man page Source code
readfasta Man page
readfirstrec Man page Source code
readsmj Man page Source code
rearranged.oriloc Man page Source code
recstat Man page Source code
residuecount Man page Source code
revaligntest Man page
reverse.align Man page Source code
rho Man page Source code
rot13 Man page Source code
rscu Man page
s2c Man page Source code
s2n Man page Source code
savelist Man page Source code
seqinr Man page
seqinr-package Man page
setlistname Man page Source code
splitseq Man page Source code
stresc Man page Source code
stutterabif Man page Source code
summary.SeqFastaAA Man page Source code
summary.SeqFastadna Man page Source code
swap Man page Source code
syncodons Man page Source code
synsequence Man page Source code
tablecode Man page Source code
test.co.recstat Man page Source code
test.li.recstat Man page Source code
toyaa Man page
toycodon Man page
translate Man page Source code
trimSpace Man page Source code
uco Man page Source code
ucoweight Man page Source code
waterabs Man page
where.is.this.acc Man page Source code
words Man page Source code
words.pos Man page Source code
write.fasta Man page Source code
zscore Man page Source code

Files

DESCRIPTION
NAMESPACE
R
R/AAstat.R
R/ClassSeq.R
R/GC.R
R/PI.R
R/R_socket.R
R/acnucclose.R
R/acnucopen.R
R/al2bp.R
R/allistranks.R
R/amb.R
R/as.alignment.R
R/as.matrix.alignment.R
R/autosocket.R
R/baselineabif.R
R/bma.R
R/cai.R
R/choosebank.R
R/circle.R
R/clfcd.R
R/clientid.R
R/closebank.R
R/col2alpha.R
R/comp.R
R/consensus.R
R/count.R
R/countfreelists.R
R/countsubseqs.R
R/db.growth.R
R/dia.bactgensize.R
R/dist.alignment.R
R/dotPlot.R
R/dotchart.uco.R
R/draw.oriloc.R
R/draw.rearranged.oriloc.R
R/draw.recstat.R
R/extract.breakpoints.R
R/extractseqs.R
R/fastacc.R
R/gb2fasta.R
R/gbk2g2.R
R/gbk2g2.euk.R
R/get.ncbi.R
R/getAnnot.R
R/getFrag.R
R/getKeyword.R
R/getLength.R
R/getLocation.R
R/getName.R
R/getSequence.R
R/getTrans.R
R/getType.R
R/getlistrank.R
R/getliststate.R
R/gfrag.R
R/ghelp.R
R/isenum.R
R/kaks.R
R/knowndbs.R
R/lseqinr.R
R/modifylist.R
R/move.R
R/oriloc.R
R/parser.socket.R
R/peakabif.R
R/permutation.R
R/plot.SeqAcnucWeb.R
R/plotPanels.R
R/plotabif.R
R/plotladder.R
R/pmw.R
R/prepgetannots.R
R/prettyseq.R
R/query.r
R/quitacnuc.R
R/read.abif.R
R/read.alignment.R
R/read.fasta.R
R/readBins.R
R/readPanels.R
R/readfirstrec.R
R/readsmj.R
R/rearranged.oriloc.R
R/recstat.R
R/residuecount.R
R/reverse.align.R
R/rho.R
R/rot13.R
R/s2n.R
R/savelist.R
R/setlistname.R
R/splitseq.R
R/stresc.R
R/stutterabif.R
R/swap.R
R/synonymous.R
R/tablecode.R
R/test.co.recstat.R
R/test.li.recstat.R
R/translate.R
R/trimSpace.R
R/uco.R
R/util.R
R/where.is.this.acc.R
R/words.R
R/words.pos.R
R/write.fasta.R
R/zscore.R
data
data/AnoukResult.RData
data/ECH.RData
data/EXP.RData
data/JLO.RData
data/SEQINR.UTIL.RData
data/aacost.RData
data/aaindex.RData
data/caitab.RData
data/chargaff.RData
data/clustal.RData
data/datalist
data/dinucl.RData
data/ec999.RData
data/fasta.RData
data/gcO2.rda
data/gcT.rda
data/gs500liz.RData
data/identifiler.RData
data/m16j.RData
data/mase.RData
data/msf.RData
data/pK.RData
data/phylip.RData
data/prochlo.RData
data/revaligntest.RData
data/sysdata.rda
data/toyaa.RData
data/toycodon.RData
data/waterabs.RData
inst
inst/CITATION
inst/abif
inst/abif/1_0000206138_C01_005.fsa
inst/abif/1_FAC321_0000205983_B02_004.fsa
inst/abif/2_0000206138_C01_005.fsa
inst/abif/2_FAC321_0000205983_B02_004.fsa
inst/abif/AmpFLSTR_Bins_v1.txt
inst/abif/AmpFLSTR_Panels_v1.txt
inst/abif/NGM_Bins.txt
inst/abif/NGM_Pa.txt
inst/abif/Promega_Bins_v1.txt
inst/abif/Promega_Panels_v1.txt
inst/abif/Prototype_PowerPlex_EP01_Bins.txt
inst/abif/Prototype_PowerPlex_EP01_Pa.txt
inst/abif/samplefsa2ps.fsa
inst/sequences
inst/sequences/Anouk.fasta
inst/sequences/DarrenObbard.fasta
inst/sequences/ECOUNC.fsa
inst/sequences/UBIQUITIN.mase
inst/sequences/ame1.gbk
inst/sequences/bb.acc
inst/sequences/bb.kwd
inst/sequences/bb.mne
inst/sequences/bb.sp
inst/sequences/bordetella.fasta
inst/sequences/bordetella.pep.aln
inst/sequences/ct.bfa
inst/sequences/ct.fasta.gz
inst/sequences/ct.gbk.gz
inst/sequences/ct.predict
inst/sequences/ecolicgpe5.fasta
inst/sequences/gopher.fasta
inst/sequences/gopher.names
inst/sequences/hannah.txt
inst/sequences/humanMito.fasta
inst/sequences/input.dat
inst/sequences/input.out
inst/sequences/legacy.fasta
inst/sequences/louse.fasta
inst/sequences/louse.names
inst/sequences/malM.fasta
inst/sequences/ortho.fasta
inst/sequences/scuco.txt
inst/sequences/seqAA.fasta
inst/sequences/smallAA.fasta
inst/sequences/smallAA.fasta.gz
inst/sequences/someORF.fsa
inst/sequences/test.aln
inst/sequences/test.mase
inst/sequences/test.msf
inst/sequences/test.phylip
man
man/AAstat.Rd
man/AnoukResult.Rd
man/ECH.Rd
man/EXP.Rd
man/GC.Rd
man/JLO.Rd
man/SEQINR.UTIL.Rd
man/SeqAcnucWeb.Rd
man/SeqFastaAA.Rd
man/SeqFastadna.Rd
man/SeqFrag.Rd
man/a.Rd
man/aaa.Rd
man/aacost.Rd
man/aaindex.Rd
man/acnucopen.Rd
man/al2bp.Rd
man/alllistranks.Rd
man/amb.Rd
man/as.alignment.Rd
man/as.matrix.alignment.Rd
man/autosocket.Rd
man/baselineabif.Rd
man/bma.Rd
man/c2s.Rd
man/cai.Rd
man/caitab.Rd
man/chargaff.Rd
man/choosebank.Rd
man/circle.Rd
man/closebank.Rd
man/clustal.Rd
man/col2alpha.Rd
man/comp.Rd
man/computePI.Rd
man/consensus.Rd
man/count.Rd
man/countfreelists.Rd
man/countsubseqs.Rd
man/crelistfromclientdata.Rd
man/dia.bactgensize.Rd
man/dinucl.Rd
man/dist.alignment.Rd
man/dotPlot.Rd
man/dotchart.uco.Rd
man/draw.oriloc.Rd
man/draw.rearranged.oriloc.Rd
man/draw.recstat.Rd
man/ec999.Rd
man/extract.breakpoints.Rd
man/extractseqs.Rd
man/fasta.Rd
man/fastacc.Rd
man/figures
man/figures/aka.pdf
man/figures/chargaff.png
man/figures/gcskewmbe96.pdf
man/figures/introduction-dbg.pdf
man/figures/lncs2004.pdf
man/figures/waterabs.jpg
man/gb2fasta.Rd
man/gbk2g2.Rd
man/gbk2g2.euk.Rd
man/gcO2.Rd
man/gcT.Rd
man/get.db.growth.Rd
man/get.ncbi.Rd
man/getAnnot.Rd
man/getFrag.Rd
man/getKeyword.Rd
man/getLength.Rd
man/getLocation.Rd
man/getName.Rd
man/getSequence.Rd
man/getTrans.Rd
man/getType.Rd
man/getlistrank.Rd
man/getliststate.Rd
man/gfrag.Rd
man/ghelp.Rd
man/gs500liz.Rd
man/identifiler.Rd
man/isenum.Rd
man/kaks.Rd
man/knowndbs.Rd
man/lseqinr.Rd
man/m16j.Rd
man/mase.Rd
man/modifylist.Rd
man/move.Rd
man/msf.Rd
man/n2s.Rd
man/oriloc.Rd
man/pK.Rd
man/parser.socket.Rd
man/peakabif.Rd
man/permutation.Rd
man/phylip.Rd
man/plot.SeqAcnucWeb.Rd
man/plotPanels.Rd
man/plotabif.Rd
man/plotladder.Rd
man/pmw.Rd
man/prepgatannots.Rd
man/prettyseq.Rd
man/print.SeqAcnucWeb.Rd
man/print.qaw.Rd
man/prochlo.Rd
man/query.Rd
man/read.abif.Rd
man/read.alignment.Rd
man/read.fasta.Rd
man/readBins.Rd
man/readPanels.Rd
man/readfirstrec.Rd
man/readsmj.Rd
man/rearranged.oriloc.Rd
man/recstat.Rd
man/residuecount.Rd
man/revaligntest.Rd
man/reverse.align.Rd
man/rot13.Rd
man/s2c.Rd
man/s2n.Rd
man/savelist.Rd
man/seqinr-package.Rd
man/setlistname.Rd
man/splitseq.Rd
man/stresc.Rd
man/stutterabif.Rd
man/swap.Rd
man/syncodons.Rd
man/synsequence.Rd
man/tablecode.Rd
man/test.co.recstat.Rd
man/test.li.recstat.Rd
man/toyaa.Rd
man/toycodon.Rd
man/translate.Rd
man/trimSpace.Rd
man/uco.Rd
man/ucoweight.Rd
man/waterabs.Rd
man/where.is.this.acc.Rd
man/words.Rd
man/words.pos.Rd
man/write.fasta.Rd
man/zscore.Rd
src
src/Makevars
src/Makevars.win
src/alignment.c
src/alignment.h
src/fastacc.c
src/getzlibsock.c
src/kaks.c
src/packagename_init.c
src/util.c
src/zsockr.c
seqinr documentation built on May 21, 2017, 12:41 a.m.