Files in seqinr
Biological Sequences Retrieval and Analysis
NEWS
NAMESPACE
DESCRIPTION
R/residuecount.R
R/cai.R
R/getKeyword.R
R/draw.recstat.R
R/dia.bactgensize.R
R/as.matrix.alignment.R
R/PI.R
R/getTrans.R
R/getAnnot.R
R/lseqinr.R
R/plotabif.R
R/draw.rearranged.oriloc.R
R/translate.R
R/R_socket.R
R/setlistname.R
R/query.r
R/synonymous.R
R/stresc.R
R/plotPanels.R
R/getLength.R
R/bma.R
R/autosocket.R
R/words.pos.R
R/move.R
R/uco.R
R/circle.R
R/s2n.R
R/read.alignment.R
R/plot.SeqAcnucWeb.R
R/recstat.R
R/getlistrank.R
R/choosebank.R
R/test.li.recstat.R
R/as.alignment.R
R/readsmj.R
R/AAstat.R
R/where.is.this.acc.R
R/comp.R
R/dotPlot.R
R/readfirstrec.R
R/db.growth.R
R/permutation.R
R/acnucclose.R
R/fastacc.R
R/getliststate.R
R/baselineabif.R
R/test.co.recstat.R
R/modifylist.R
R/getFrag.R
R/gb2fasta.R
R/al2bp.R
R/pmw.R
R/closebank.R
R/util.R
R/getSequence.R
R/dotchart.uco.R
R/trimSpace.R
R/swap.R
R/extractseqs.R
R/oriloc.R
R/acnucopen.R
R/peakabif.R
R/allistranks.R
R/consensus.R
R/tablecode.R
R/gbk2g2.R
R/dist.alignment.R
R/rearranged.oriloc.R
R/extract.breakpoints.R
R/zscore.R
R/prettyseq.R
R/clfcd.R
R/words.R
R/kaks.R
R/write.fasta.R
R/readBins.R
R/prepgetannots.R
R/getType.R
R/countfreelists.R
R/count.R
R/gfrag.R
R/stutterabif.R
R/GC.R
R/getLocation.R
R/quitacnuc.R
R/reverse.align.R
R/readPanels.R
R/countsubseqs.R
R/clientid.R
R/read.abif.R
R/rho.R
R/col2alpha.R
R/getName.R
R/splitseq.R
R/ghelp.R
R/plotladder.R
R/draw.oriloc.R
R/read.fasta.R
R/amb.R
R/parser.socket.R
R/isenum.R
R/rot13.R
R/gbk2g2.euk.R
R/knowndbs.R
R/savelist.R
R/ClassSeq.R
src/Makevars.win
src/Makevars
src/util.c
src/alignment.h
src/getzlibsock.c
src/alignment.c
src/fastacc.c
src/kaks.c
src/packagename_init.c
src/zsockr.c
inst/CITATION
inst/abif/Prototype_PowerPlex_EP01_Bins.txt
inst/abif/1_FAC321_0000205983_B02_004.fsa
inst/abif/AmpFLSTR_Panels_v1.txt
inst/abif/samplefsa2ps.fsa
inst/abif/Promega_Panels_v1.txt
inst/abif/NGM_Pa.txt
inst/abif/1_0000206138_C01_005.fsa
inst/abif/2_0000206138_C01_005.fsa
inst/abif/AmpFLSTR_Bins_v1.txt
inst/abif/2_FAC321_0000205983_B02_004.fsa
inst/abif/NGM_Bins.txt
inst/abif/Promega_Bins_v1.txt
inst/abif/Prototype_PowerPlex_EP01_Pa.txt
inst/sequences/Anouk.fasta
inst/sequences/bb.kwd
inst/sequences/test.phylip
inst/sequences/test.msf
inst/sequences/louse.fasta
inst/sequences/ct.gbk.gz
inst/sequences/LTPs128_SSU_aligned_First_Two.fasta
inst/sequences/malM.fasta
inst/sequences/humanMito.fasta
inst/sequences/bb.sp
inst/sequences/someORF.fsa
inst/sequences/ct.predict
inst/sequences/hannah.txt
inst/sequences/ecolicgpe5.fasta
inst/sequences/ortho.fasta
inst/sequences/smallAA.fasta.gz
inst/sequences/UBIQUITIN.mase
inst/sequences/legacy.fasta
inst/sequences/test.mase
inst/sequences/test.aln
inst/sequences/ECOUNC.fsa
inst/sequences/gopher.names
inst/sequences/smallAA.fasta
inst/sequences/ct.fasta.gz
inst/sequences/input.out
inst/sequences/seqAA.fasta
inst/sequences/input.dat
inst/sequences/bb.acc
inst/sequences/bordetella.fasta
inst/sequences/gopher.fasta
inst/sequences/scuco.txt
inst/sequences/bb.mne
inst/sequences/louse.names
inst/sequences/kaks-torture.fasta
inst/sequences/bordetella.pep.aln
inst/sequences/ame1.gbk
inst/sequences/ct.bfa
inst/sequences/DarrenObbard.fasta
build/partial.rdb
data/datalist
data/sysdata.rda
data/prochlo.RData
data/caitab.RData
data/ECH.RData
data/dinucl.RData
data/phylip.RData
data/ec999.RData
data/AnoukResult.RData
data/EXP.RData
data/fasta.RData
data/SEQINR.UTIL.RData
data/mase.RData
data/revaligntest.RData
data/msf.RData
data/toyaa.RData
data/kaksTorture.RData
data/pK.RData
data/gcO2.rda
data/gcT.rda
data/m16j.RData
data/JLO.RData
data/aaindex.RData
data/aacost.RData
data/chargaff.RData
data/toycodon.RData
data/gs500liz.RData
data/identifiler.RData
data/clustal.RData
data/waterabs.RData
man/alllistranks.Rd
man/read.alignment.Rd
man/baselineabif.Rd
man/crelistfromclientdata.Rd
man/gfrag.Rd
man/JLO.Rd
man/peakabif.Rd
man/SeqFastaAA.Rd
man/gcT.Rd
man/draw.recstat.Rd
man/acnucopen.Rd
man/draw.oriloc.Rd
man/aaa.Rd
man/prepgatannots.Rd
man/translate.Rd
man/chargaff.Rd
man/c2s.Rd
man/revaligntest.Rd
man/countfreelists.Rd
man/draw.rearranged.oriloc.Rd
man/as.matrix.alignment.Rd
man/col2alpha.Rd
man/print.qaw.Rd
man/dia.bactgensize.Rd
man/test.li.recstat.Rd
man/autosocket.Rd
man/stutterabif.Rd
man/words.Rd
man/GC.Rd
man/ucoweight.Rd
man/prochlo.Rd
man/gb2fasta.Rd
man/getliststate.Rd
man/move.Rd
man/getTrans.Rd
man/write.fasta.Rd
man/seqinr-package.Rd
man/n2s.Rd
man/amb.Rd
man/recstat.Rd
man/getFrag.Rd
man/read.fasta.Rd
man/splitseq.Rd
man/mase.Rd
man/knowndbs.Rd
man/count.Rd
man/s2c.Rd
man/getKeyword.Rd
man/dinucl.Rd
man/query.Rd
man/identifiler.Rd
man/plotabif.Rd
man/zscore.Rd
man/gs500liz.Rd
man/toycodon.Rd
man/gbk2g2.euk.Rd
man/plot.SeqAcnucWeb.Rd
man/dotPlot.Rd
man/countsubseqs.Rd
man/pK.Rd
man/fasta.Rd
man/dotchart.uco.Rd
man/parser.socket.Rd
man/ghelp.Rd
man/plotladder.Rd
man/EXP.Rd
man/SeqFrag.Rd
man/permutation.Rd
man/closebank.Rd
man/savelist.Rd
man/read.abif.Rd
man/clustal.Rd
man/ec999.Rd
man/circle.Rd
man/synsequence.Rd
man/kaks-torture.Rd
man/a.Rd
man/oriloc.Rd
man/modifylist.Rd
man/trimSpace.Rd
man/lseqinr.Rd
man/prettyseq.Rd
man/extractseqs.Rd
man/rearranged.oriloc.Rd
man/swap.Rd
man/m16j.Rd
man/plotPanels.Rd
man/getlistrank.Rd
man/AAstat.Rd
man/print.SeqAcnucWeb.Rd
man/dist.alignment.Rd
man/residuecount.Rd
man/comp.Rd
man/consensus.Rd
man/readBins.Rd
man/gbk2g2.Rd
man/cai.Rd
man/syncodons.Rd
man/getLocation.Rd
man/test.co.recstat.Rd
man/msf.Rd
man/computePI.Rd
man/as.alignment.Rd
man/stresc.Rd
man/getSequence.Rd
man/reverse.align.Rd
man/gcO2.Rd
man/getName.Rd
man/kaks.Rd
man/readfirstrec.Rd
man/choosebank.Rd
man/al2bp.Rd
man/getLength.Rd
man/toyaa.Rd
man/getAnnot.Rd
man/get.db.growth.Rd
man/tablecode.Rd
man/rot13.Rd
man/isenum.Rd
man/readPanels.Rd
man/bma.Rd
man/AnoukResult.Rd
man/fastacc.Rd
man/phylip.Rd
man/aacost.Rd
man/SeqFastadna.Rd
man/s2n.Rd
man/aaindex.Rd
man/setlistname.Rd
man/getType.Rd
man/ECH.Rd
man/pmw.Rd
man/caitab.Rd
man/readsmj.Rd
man/where.is.this.acc.Rd
man/extract.breakpoints.Rd
man/SeqAcnucWeb.Rd
man/words.pos.Rd
man/waterabs.Rd
man/uco.Rd
man/SEQINR.UTIL.Rd
man/figures/gcskewmbe96.pdf
man/figures/lncs2004.pdf
man/figures/chargaff.png
man/figures/waterabs.jpg
man/figures/introduction-dbg.pdf
man/figures/aka.pdf
