Nothing
#
# To get the location of subsequences from an ACNUC server
#
getLocation <- function(object, ...) UseMethod("getLocation")
getLocation.list <- function(object, ...)
lapply(seq_len(length(object)), function(i) getLocation(object[[i]], ...))
getLocation.default <- function(object, ...)
stop(paste("no getLocation method for objects of class:", class(object)))
getLocation.SeqAcnucWeb <- function(object, ..., socket = autosocket()){
getLocationSocket <- function( socket, name){
writeLines(paste("isenum&name=",name,sep=""),socket,sep="\n")
res = readLines( socket , n=1 )
number = parser.socket(res)[1]
writeLines(paste("readsub&num=",number,sep=""),socket,sep="\n")
res2 = readLines( socket , n=1 )
rr = parser.socket(res2)
# Test si subsequence
l=list()
if(as.numeric(rr[5]) != 0){
warning("It's a parent sequence\n")
return( NA )
}
else {
i=1
writeLines(paste("readext&num=",rr[6],sep=""),socket,sep="\n")
res3 = readLines( socket , n=1 )
r = parser.socket(res3)
l[[i]] = as.numeric(c(r[3],r[4]))
n=r[5]
}
while(as.numeric(n) != 0){
i=i+1
writeLines(paste("readext&num=",n,sep=""),socket,sep="\n")
res4 = readLines( socket , n=1 )
rrr = parser.socket(res4)
l[[i]] = as.numeric(c(rrr[3],rrr[4]))
n=rrr[5]
}
return(l)
}
unlist(getLocationSocket(socket, name = object))
}
getLocation.qaw <- function(object, ...) getLocation(object$req, ...)
getLocation.logical <- function (object, ...)
object # so that NA is returned for virtual lists
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