999 coding sequences from E. coli

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Description

This dataset contains 999 coding sequences from the Escherichia coli chromosome

Usage

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Format

List of 999 vectors of characters, one for each coding sequence.

ECFOLE.FOLE

chr [1:672] "A" "T" "G" "C" ...

ECMSBAG.MSBA

chr [1:1749] "A" "T" "G" "C" ...

ECNARZYW-C.NARV

chr [1:681] "A" "T" "G" "A" ...

...

... TRUNCATED ...

XYLEECOM.MALK

chr [1:1116] "A" "T" "G" "G" ...

XYLEECOM.LAMB

chr [1:1341] "A" "T" "G" "A" ...

XYLEECOM.MALM

chr [1:921] "A" "T" "G" "A" ...

References

Lobry, J.R., Gautier, C. (1994) Hydrophobicity, expressivity and aromaticity are the major trends of amino-acid usage in 999 Escherichia coli chromosome-encode genes. Nucleic Acids Research,22:3174-3180.

citation("seqinr")

Examples

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data(ec999)
#
# How to export sequences in a FASTA file:
#
write.fasta(ec999, names(ec999), file = "ec999.ffn")

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