This function reads a file in GenBank format and converts the features corresponding to CDS (Coding Sequences) into a format similar to glimmer program output.
gbk2g2(gbkfile = "ftp://pbil.univ-lyon1.fr/pub/seqinr/data/ct.gbk", g2.coord = "g2.coord")
The name of the GenBank file
The name of the output file in glimmer-like format
Partial CDS (either 5' or 3') and join in features are discarded.
The input file is returned invisibly.
oriloc which uses glimmer-like files,
gbk2g2.euk for eukaryotic sequences with introns.
1 2 3 4 5 6 7
Want to suggest features or report bugs for rdrr.io? Use the GitHub issue tracker.