JLO: Forensic Genetic Profile Raw Data
In seqinr: Biological Sequences Retrieval and Analysis
JLO R Documentation
Forensic Genetic Profile Raw Data
Description
This is an example of raw data for a human STR genetic profile at 16 loci
(viz. D8S1179, D21S11, D7S820, CSF1PO, D3S1358, TH01, D13S317, D16S539,
D2S1338, D19S433, vWA, TPOX, D18S51, Amelogenin, D5S818, FGA) which
are commonly used in forensic sciences for individual identifications.
Usage
data(JLO)
Format
A list with 3 components.
- Header
a list corresponding to the header in the ABIF file
- Directory
a data.frame corresponding to the Directory in the ABIF file
- Data
a list with all raw data in the ABIF file.
Details
This dataset is the expected result when reading the file
2_FAC321_0000205983_B02_004.fsa with the
function read.abif. This dataset is used for
the quality check of this function.
Author(s)
J.R. Lobry
Source
The DNA source is from the author so that there are no privacy concern.
Data were kindly provided by the INPS (Institut National de Police Scientifique)
which is the national forensic sciences institute in France. Experiments
were done at the LPS (Laboratoire de Police Scientifique de Lyon) in 2008.
References
citation("seqinr")
Anonymous (2006) Applied Biosystem Genetic Analysis Data File Format.
Available at https://www.thermofisher.com/de/de/home/brands/applied-biosystems.html.
Last visited on 03-NOV-2008.
See Also
function read.abif to import files in ABIF format,
data gs500liz for internal size standards,
data ECH for the corresponding allelic ladder,
data identifiler for allele names in the allelic ladder.
Examples
data(JLO)
seqinr documentation built on March 31, 2023, 3:05 p.m.
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| JLO | R Documentation |
Forensic Genetic Profile Raw Data
Description
This is an example of raw data for a human STR genetic profile at 16 loci (viz. D8S1179, D21S11, D7S820, CSF1PO, D3S1358, TH01, D13S317, D16S539, D2S1338, D19S433, vWA, TPOX, D18S51, Amelogenin, D5S818, FGA) which are commonly used in forensic sciences for individual identifications.
Usage
data(JLO)Format
A list with 3 components.
- Header
a list corresponding to the header in the ABIF file
- Directory
a data.frame corresponding to the Directory in the ABIF file
- Data
a list with all raw data in the ABIF file.
Details
This dataset is the expected result when reading the file
2_FAC321_0000205983_B02_004.fsa with the
function read.abif. This dataset is used for
the quality check of this function.
Author(s)
J.R. Lobry
Source
The DNA source is from the author so that there are no privacy concern. Data were kindly provided by the INPS (Institut National de Police Scientifique) which is the national forensic sciences institute in France. Experiments were done at the LPS (Laboratoire de Police Scientifique de Lyon) in 2008.
References
citation("seqinr")
Anonymous (2006) Applied Biosystem Genetic Analysis Data File Format. Available at https://www.thermofisher.com/de/de/home/brands/applied-biosystems.html. Last visited on 03-NOV-2008.
See Also
function read.abif to import files in ABIF format,
data gs500liz for internal size standards,
data ECH for the corresponding allelic ladder,
data identifiler for allele names in the allelic ladder.
Examples
data(JLO)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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