ucoweight: Weight of each synonymous codon
In seqinr: Biological Sequences Retrieval and Analysis
ucoweight R Documentation
Weight of each synonymous codon
Description
Returns a list containing, for each of the 20 amino acids + STOP
codon, the codon usage bias of each of the synonymous codon according
to a given codon sequence.
Usage
ucoweight(sequence, numcode = 1)
Arguments
sequence
A nucleic acids sequence
numcode
The genetic code number as in translate
Value
a list containing, for each of the 20 amino acids and STOP
codon (list tags), the weight of each synonymous codon (including the
original one).
Author(s)
L. Palmeira
References
citation("seqinr")
See Also
synsequence
Examples
data(ec999)
ucoweight(ec999[1][[1]])
seqinr documentation built on March 31, 2023, 3:05 p.m.
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| ucoweight | R Documentation |
Weight of each synonymous codon
Description
Returns a list containing, for each of the 20 amino acids + STOP codon, the codon usage bias of each of the synonymous codon according to a given codon sequence.
Usage
ucoweight(sequence, numcode = 1)Arguments
sequence |
A nucleic acids sequence |
numcode |
The genetic code number as in |
Value
a list containing, for each of the 20 amino acids and STOP codon (list tags), the weight of each synonymous codon (including the original one).
Author(s)
L. Palmeira
References
citation("seqinr")
See Also
synsequence
Examples
data(ec999)
ucoweight(ec999[1][[1]])
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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