Files in twDEMC
parallel DEMC

DESCRIPTION
NAMESPACE
R
R/S3twDEMC.R R/S3twDEMCPops.R R/den2dCor.R R/denSparceRichBoth.R R/initZ.R R/invChiSquare.R R/logDenGaussion.R R/marginals.R R/normConst.R R/plotTwDEMC.R R/sa.R R/tempDec.R R/transScale.R R/twCalcLogDenPar.R R/twDEMCBlocks.R R/twMisc.R R/util.R R/zz.R
TODO.txt
build
build/vignette.rds
data
data/twLinreg1.RData
data/twTwoDenEx1.RData
data/twdemcEx1.RData
depr
depr/acceptedPosY.R depr/memoize.R depr/multiModal.R depr/tempDec.R
inst
inst/SigmaBlockEx1
inst/SigmaBlockEx1/fitSigmaBlock.R
inst/TwoDenEx1
inst/TwoDenEx1/TwoDenEx1.R inst/TwoDenEx1/fitTwoDenEx1.R inst/TwoDenEx1/fitTwoDenEx1_bak.R
inst/develop
inst/develop/ClusterControlFlow.graphml
inst/doc
inst/doc/SamplingObsUncertainty.R inst/doc/SamplingObsUncertainty.Rmd
inst/doc/SamplingObsUncertainty.html
inst/doc/SimpleSingleModel.R inst/doc/SimpleSingleModel.Rmd
inst/doc/SimpleSingleModel.html
inst/doc/TwoDen.R inst/doc/TwoDen.Rmd
inst/doc/TwoDen.html
inst/genData
inst/genData/genDataLin1.R inst/genData/genDataTwTwoDenEx4.R inst/genData/genDataTwdemcEx1.R inst/genData/twDEMC-package.Rd inst/genData/twLinreg1.Rd inst/genData/twTwoDenEx1.Rd inst/genData/twdemcEx1.Rd
inst/scratch
inst/scratch/divideTwDEMS_beforeT.R inst/scratch/thetaHatRaftery07.R
inst/unitTests
inst/unitTests/TODO_runitdivideTwDEMC.R inst/unitTests/runitS3twDEMC.R inst/unitTests/runitcalcDEMCTemp.R inst/unitTests/runitconstrainNStack.R inst/unitTests/runitinitZ.R inst/unitTests/runitlogDenGaussian.R inst/unitTests/runitreplaceZinitNonFiniteLogLiks.R inst/unitTests/runitrunTwDEMC.R inst/unitTests/runittransOrigPopt.R inst/unitTests/runittwCalcLogDenPar.R inst/unitTests/runittwDEMC.R inst/unitTests/runittwDEMCMulti.R inst/unitTests/runittwDEMCPops.R inst/unitTests/runittwDEMCSA.R
man
man/as.mcmc.list.twDEMC.Rd man/as.mcmc.list.twDEMCPops.Rd man/calcBaseTemp.Rd man/calcBaseTempSk.Rd man/calcComponentTemp.Rd man/calcDEMCTemp.Rd man/calcDEMCTempProp.Rd man/calcM0twDEMC.Rd man/calcStreamTemp.Rd man/calcTemperatedLogDen.Rd man/calcTemperatedLogDen.default.Rd man/calcTemperatedLogDen.twDEMCPops.Rd man/calcTemperatedLogDenChains.array.Rd man/calcTemperatedLogDenChains.twDEMC.Rd man/combinePops.twDEMC.Rd man/combineTwDEMCPops.Rd man/completeResCompVec.Rd man/concatPops.Rd man/concatPops.twDEMCPops.Rd man/constrainCfStack.Rd man/constrainNStack.Rd man/dDistr.Rd man/den2dCor.Rd man/denBoth.Rd man/denRich.Rd man/denRichPrior.Rd man/denSparse.Rd man/denSparsePrior.Rd man/dinvchisq.Rd man/dummyTwDEMCModel.Rd man/getBestModelIndex.Rd man/getBestModelIndices.Rd man/getCurrentBaseTemp.twDEMCPops.Rd man/getCurrentTemp.twDEMC.Rd man/getCurrentTemp.twDEMCPops.Rd man/getNBlocks.twDEMC.Rd man/getNBlocks.twDEMCPops.Rd man/getNChains.twDEMC.Rd man/getNChains.twDEMCPops.Rd man/getNChainsPop.twDEMC.Rd man/getNChainsPop.twDEMCPops.Rd man/getNGen.twDEMC.Rd man/getNGen.twDEMCPops.Rd man/getNParms.twDEMC.Rd man/getNParms.twDEMCPops.Rd man/getNPops.twDEMC.Rd man/getNPops.twDEMCPops.Rd man/getNSamples.twDEMC.Rd man/getNSamples.twDEMCPops.Rd man/getNSamplesSpace.twDEMCPops.Rd man/getNSpaces.twDEMCPops.Rd man/getParBoundsPop.twDEMCPops.Rd man/getSpacesPop.twDEMCPops.Rd man/iSample2time.Rd man/initZtwDEMCExt.matrix.Rd man/initZtwDEMCExt.twDEMC.Rd man/initZtwDEMCNormal.Rd man/initZtwDEMCSub.matrix.Rd man/initZtwDEMCSub.twDEMC.Rd man/isLogDenDrift.Rd man/logDenGaussian.Rd man/marginals1d.Rd man/marginals2d.Rd man/marginals3d.Rd man/mcmcListApply.Rd man/modTwTwoDenEx1.Rd man/normConstLaplace.Rd man/normConstLaplaceBridge.Rd man/orderLogDen.Rd man/plotChainPopMoves.Rd man/plotThinned.Rd man/plotThinned.mcmc.list.Rd man/popApplyTwDEMC.Rd man/popMeansTwDEMC.Rd man/replaceZinitCases.Rd man/replaceZinitNonFiniteLogDens.Rd man/replaceZinitNonFiniteLogDensLastStep.Rd man/rinvchisq.Rd man/squeeze.twDEMCPops.Rd man/stackChains.array.Rd man/stackChains.mcmc.list.Rd man/stackChains.twDEMC.Rd man/stackChains.twDEMCPops.Rd man/stackChainsPop.twDEMC.Rd man/stackChainsPop.twDEMCPops.Rd man/stackPops.twDEMCPops.Rd man/stackPopsInSpace.twDEMCPops.Rd man/subChains.twDEMC.Rd man/subPops.twDEMCPops.Rd man/subset.twDEMC.Rd man/subset.twDEMCPops.Rd man/subsetF.twDEMCPops.Rd man/subsetTail.twDEMCPops.Rd man/sumLogDenCompBlocks.Rd man/thin.twDEMC.Rd man/thin.twDEMCPops.Rd man/thinN.mcmc.list.Rd man/time2iSample.Rd man/transNormPopt.default.Rd man/transOrigPopt.array.Rd man/transOrigPopt.default.Rd man/transOrigPopt.matrix.Rd man/transOrigPopt.mcmc.list.Rd man/transOrigPopt.twDEMC.Rd man/twCalcLogDenPar.Rd man/twCalcLogDensPar.Rd man/twCoefLnorm.Rd man/twCoefLnormCi.Rd man/twCoefLnormMLE.Rd man/twConstrainPoptDistr.Rd man/twDEMC-package.Rd man/twDEMCBlock.array.Rd man/twDEMCBlock.twDEMC.Rd man/twDEMCBlock.twDEMCPops.Rd man/twDEMCBlockInt.Rd man/twDEMCSA.Rd man/twDEMCSACont.Rd man/twLinreg1.Rd man/twQuantiles2Coef.Rd man/twRunDEMCSA.Rd man/twTwoDenEx1.Rd man/twVarDistrVec.Rd man/twdemcEx1.Rd man/updateBlockTwDEMC.Rd man/updateSigmaByGibbsSamplingInvchisq.Rd
scratch
scratch/applyLB.R scratch/demcStep_commonTemp.R scratch/ggplot.R scratch/ofMultiSum.R scratch/scratch.R scratch/twDEMC_multiMetSum.R scratch/twDEMC_repeatT.R scratch/twDEMC_seq.R
tests
tests/doRUnit.R
vignettes
vignettes/SamplingObsUncertainty.Rmd vignettes/SimpleSingleModel.Rmd vignettes/TwoDen.Rmd
twDEMC documentation built on May 31, 2017, 3:44 a.m.