Files in twDEMC
parallel DEMC
TODO.txt
DESCRIPTION
NAMESPACE
inst/unitTests/runitcalcDEMCTemp.R
inst/unitTests/TODO_runitdivideTwDEMC.R
inst/unitTests/runitconstrainNStack.R
inst/unitTests/runitrunTwDEMC.R
inst/unitTests/runitreplaceZinitNonFiniteLogLiks.R
inst/unitTests/runitlogDenGaussian.R
inst/unitTests/runitinitZ.R
inst/unitTests/runittwDEMCMulti.R
inst/unitTests/runitS3twDEMC.R
inst/unitTests/runittwDEMC.R
inst/unitTests/runittwDEMCPops.R
inst/unitTests/runittwDEMCSA.R
inst/unitTests/runittwCalcLogDenPar.R
inst/unitTests/runittransOrigPopt.R
inst/doc/TwoDen.R
inst/doc/SamplingObsUncertainty.html
inst/doc/SimpleSingleModel.Rmd
inst/doc/SimpleSingleModel.html
inst/doc/SamplingObsUncertainty.Rmd
inst/doc/SimpleSingleModel.R
inst/doc/TwoDen.html
inst/doc/TwoDen.Rmd
inst/doc/SamplingObsUncertainty.R
inst/SigmaBlockEx1/fitSigmaBlock.R
inst/develop/ClusterControlFlow.graphml
inst/TwoDenEx1/fitTwoDenEx1_bak.R
inst/TwoDenEx1/TwoDenEx1.R
inst/TwoDenEx1/fitTwoDenEx1.R
inst/genData/genDataTwTwoDenEx4.R
inst/genData/twdemcEx1.Rd
inst/genData/twDEMC-package.Rd
inst/genData/genDataLin1.R
inst/genData/twTwoDenEx1.Rd
inst/genData/twLinreg1.Rd
inst/genData/genDataTwdemcEx1.R
inst/scratch/thetaHatRaftery07.R
inst/scratch/divideTwDEMS_beforeT.R
vignettes/SimpleSingleModel.Rmd
vignettes/SamplingObsUncertainty.Rmd
vignettes/TwoDen.Rmd
depr/tempDec.R
depr/memoize.R
depr/acceptedPosY.R
depr/multiModal.R
R/invChiSquare.R
R/tempDec.R
R/logDenGaussion.R
R/den2dCor.R
R/util.R
R/sa.R
R/normConst.R
R/twCalcLogDenPar.R
R/S3twDEMCPops.R
R/S3twDEMC.R
R/plotTwDEMC.R
R/twMisc.R
R/zz.R
R/transScale.R
R/twDEMCBlocks.R
R/denSparceRichBoth.R
R/initZ.R
R/marginals.R
man/popApplyTwDEMC.Rd
man/getNParms.twDEMCPops.Rd
man/logDenGaussian.Rd
man/getNBlocks.twDEMC.Rd
man/transOrigPopt.twDEMC.Rd
man/rinvchisq.Rd
man/calcBaseTemp.Rd
man/twDEMCBlockInt.Rd
man/iSample2time.Rd
man/getNSamplesSpace.twDEMCPops.Rd
man/getNGen.twDEMCPops.Rd
man/dummyTwDEMCModel.Rd
man/subset.twDEMC.Rd
man/twDEMCSACont.Rd
man/plotChainPopMoves.Rd
man/combinePops.twDEMC.Rd
man/as.mcmc.list.twDEMCPops.Rd
man/calcComponentTemp.Rd
man/thin.twDEMCPops.Rd
man/concatPops.twDEMCPops.Rd
man/twQuantiles2Coef.Rd
man/plotThinned.mcmc.list.Rd
man/twConstrainPoptDistr.Rd
man/constrainNStack.Rd
man/subChains.twDEMC.Rd
man/getCurrentBaseTemp.twDEMCPops.Rd
man/calcDEMCTempProp.Rd
man/transOrigPopt.matrix.Rd
man/initZtwDEMCExt.twDEMC.Rd
man/twCoefLnorm.Rd
man/stackPopsInSpace.twDEMCPops.Rd
man/den2dCor.Rd
man/as.mcmc.list.twDEMC.Rd
man/calcDEMCTemp.Rd
man/getNBlocks.twDEMCPops.Rd
man/normConstLaplace.Rd
man/marginals2d.Rd
man/orderLogDen.Rd
man/getNPops.twDEMCPops.Rd
man/twCalcLogDensPar.Rd
man/normConstLaplaceBridge.Rd
man/initZtwDEMCSub.matrix.Rd
man/calcTemperatedLogDen.twDEMCPops.Rd
man/getNChainsPop.twDEMCPops.Rd
man/stackChains.array.Rd
man/denSparse.Rd
man/subPops.twDEMCPops.Rd
man/denRich.Rd
man/twCoefLnormCi.Rd
man/twdemcEx1.Rd
man/transOrigPopt.mcmc.list.Rd
man/twDEMCBlock.array.Rd
man/twDEMC-package.Rd
man/time2iSample.Rd
man/twVarDistrVec.Rd
man/updateSigmaByGibbsSamplingInvchisq.Rd
man/stackChainsPop.twDEMC.Rd
man/stackPops.twDEMCPops.Rd
man/calcTemperatedLogDen.Rd
man/getNChains.twDEMCPops.Rd
man/mcmcListApply.Rd
man/getNPops.twDEMC.Rd
man/getCurrentTemp.twDEMCPops.Rd
man/getNSamples.twDEMC.Rd
man/marginals1d.Rd
man/stackChains.twDEMC.Rd
man/updateBlockTwDEMC.Rd
man/subsetF.twDEMCPops.Rd
man/dDistr.Rd
man/popMeansTwDEMC.Rd
man/denBoth.Rd
man/calcM0twDEMC.Rd
man/subsetTail.twDEMCPops.Rd
man/twTwoDenEx1.Rd
man/isLogDenDrift.Rd
man/constrainCfStack.Rd
man/getBestModelIndices.Rd
man/stackChains.mcmc.list.Rd
man/twLinreg1.Rd
man/stackChains.twDEMCPops.Rd
man/modTwTwoDenEx1.Rd
man/stackChainsPop.twDEMCPops.Rd
man/thinN.mcmc.list.Rd
man/getParBoundsPop.twDEMCPops.Rd
man/initZtwDEMCSub.twDEMC.Rd
man/plotThinned.Rd
man/calcStreamTemp.Rd
man/denRichPrior.Rd
man/getNParms.twDEMC.Rd
man/completeResCompVec.Rd
man/twCalcLogDenPar.Rd
man/twDEMCSA.Rd
man/twDEMCBlock.twDEMCPops.Rd
man/calcTemperatedLogDenChains.array.Rd
man/subset.twDEMCPops.Rd
man/getNSpaces.twDEMCPops.Rd
man/twRunDEMCSA.Rd
man/denSparsePrior.Rd
man/calcTemperatedLogDen.default.Rd
man/getNSamples.twDEMCPops.Rd
man/twDEMCBlock.twDEMC.Rd
man/getNGen.twDEMC.Rd
man/dinvchisq.Rd
man/twCoefLnormMLE.Rd
man/transOrigPopt.default.Rd
man/getNChainsPop.twDEMC.Rd
man/calcTemperatedLogDenChains.twDEMC.Rd
man/concatPops.Rd
man/transNormPopt.default.Rd
man/initZtwDEMCExt.matrix.Rd
man/sumLogDenCompBlocks.Rd
man/getBestModelIndex.Rd
man/replaceZinitNonFiniteLogDensLastStep.Rd
man/calcBaseTempSk.Rd
man/combineTwDEMCPops.Rd
man/marginals3d.Rd
man/thin.twDEMC.Rd
man/transOrigPopt.array.Rd
man/getSpacesPop.twDEMCPops.Rd
man/initZtwDEMCNormal.Rd
man/replaceZinitCases.Rd
man/squeeze.twDEMCPops.Rd
man/replaceZinitNonFiniteLogDens.Rd
man/getNChains.twDEMC.Rd
man/getCurrentTemp.twDEMC.Rd
scratch/scratch.R
scratch/demcStep_commonTemp.R
scratch/ggplot.R
scratch/twDEMC_multiMetSum.R
scratch/twDEMC_seq.R
scratch/ofMultiSum.R
scratch/applyLB.R
scratch/twDEMC_repeatT.R
build/vignette.rds
tests/doRUnit.R
data/twTwoDenEx1.RData
data/twdemcEx1.RData
data/twLinreg1.RData
